PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g16350.1
Common NameLR48_Vigan01g297000
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 323aa    MW: 35014.6 Da    PI: 6.5107
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g16350.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.82.3e-33193251159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK vk+s++prsYYrCt+a C vkk+vers+edp vv++tYeg+H+h+
  Vang11g16350.1 193 LDDGYRWRKYGQKAVKNSPHPRSYYRCTTAACGVKKRVERSSEDPAVVVTTYEGQHTHP 251
                     59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.1E-35178253IPR003657WRKY domain
SuperFamilySSF1182903.92E-29186253IPR003657WRKY domain
PROSITE profilePS5081132.351188253IPR003657WRKY domain
SMARTSM007741.7E-39193252IPR003657WRKY domain
PfamPF031064.6E-27194251IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MANSVAFSDE IPNMTMTMSF PFSPAFSTIF DIMPPLPPPP SSSLPHDPKA SNFPFMDLLS  60
VPDYIPSLFD WPQNTAVTSP PPPPAPTQIT HALPSPASSN VPDGGSEVLN TPPSPNYSSI  120
SSSSNEAAAA AANKATGNED EPEEDETATD AAGKGEDQDQ DKSKNQPKPK KKHQKKPREP  180
RFAFKTKSEV DHLDDGYRWR KYGQKAVKNS PHPRSYYRCT TAACGVKKRV ERSSEDPAVV  240
VTTYEGQHTH PCPATSRASL GFLHSEPSAF GPTSGLFMLQ QQQHQQFRHD QAQAQAQAQA  300
QAQVAMLYNS TTTSTSSSSS PLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-27185254978Probable WRKY transcription factor 4
2lex_A3e-27185254978Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g16350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017424604.10.0PREDICTED: probable WRKY transcription factor 23
SwissprotO229002e-47WRK23_ARATH; WRKY transcription factor 23
TrEMBLA0A0L9TTB80.0A0A0L9TTB8_PHAAN; Uncharacterized protein
TrEMBLA0A0S3R9070.0A0A0S3R907_PHAAN; Uncharacterized protein
STRINGXP_007154400.11e-142(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100234114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.12e-45WRKY DNA-binding protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  4. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  5. Prát T, et al.
    WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity.
    PLoS Genet., 2018. 14(1): p. e1007177
    [PMID:29377885]