PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g16720.1
Common NameLR48_Vigan01g301400
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GATA
Protein Properties Length: 127aa    MW: 13341.1 Da    PI: 10.4469
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g16720.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA603e-193568134
            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                    C+ CgttkTplWR gp g+k+LCnaCG++ rkk+
  Vang11g16720.1 35 CADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKK 68
                    ********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.85E-132969No hitNo description
PROSITE profilePS5011412.6112965IPR000679Zinc finger, GATA-type
SMARTSM004013.8E-132982IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.105.1E-163369IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.36E-123487No hitNo description
PfamPF003204.4E-173569IPR000679Zinc finger, GATA-type
PROSITE patternPS0034403560IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MVDPTRKGSE GEDSNPNAPS SGNSPSSNNE QKKTCADCGT TKTPLWRGGP AGPKSLCNAC  60
GIRSRKKKRA ILGISKGNNE DGRKGKKSGG ALGREVLLHR SHWKKLGEEE KAAVLLMSLS  120
YGSVYA*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00335DAPTransfer from AT3G06740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g16720.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-120AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017430147.11e-85PREDICTED: GATA transcription factor 15
SwissprotQ9FJ105e-33GAT16_ARATH; GATA transcription factor 16
TrEMBLA0A0L9TSC03e-84A0A0L9TSC0_PHAAN; Uncharacterized protein
STRINGXP_007154340.17e-67(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15693298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.14e-34GATA transcription factor 15
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  3. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]