PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang11g16770.3

Common Name

LR48_Vigan01g301700

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

ARR-B

Protein Properties

Length: 602aa MW: 65340.8 Da PI: 6.7026

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang11g16770.3	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	48.8	1.6e-15	147	177	25	55
G2-like 25 ekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl Vang11g16770.3 147 GKAVPKKILELMNVPGLTRENVASHLQKYRL 177 59****************************8 PP
2	Response_reg	56.7	1.4e-19	42	127	25	109
EEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS Response_reg 25 evaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109 +v+ + +e al ll+e++ +D+++ D+ mp+mdG++ll++i e +lp+i+++a + ++ + + + Ga d+l Kp+ +e+l + Vang11g16770.3 42 SVTKCNRAETALSLLRENKngFDIVISDVHMPDMDGFKLLEHIGLEM-DLPVIMMSADDGKSVVMKGVTHGACDYLIKPVRIEALKN 127 466677788899999888778********************6654.8********************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.40.50.2300	4.1E-32	23	144	No hit	No description
SuperFamily	SSF52172	3.98E-29	23	140	IPR011006	CheY-like superfamily
SMART	SM00448	1.1E-21	24	129	IPR001789	Signal transduction response regulator, receiver domain
PROSITE profile	PS50110	30.389	25	133	IPR001789	Signal transduction response regulator, receiver domain
Pfam	PF00072	2.1E-16	26	127	IPR001789	Signal transduction response regulator, receiver domain
CDD	cd00156	2.10E-22	27	132	No hit	No description
SuperFamily	SSF46689	7.53E-9	146	181	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.7E-15	147	182	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.2E-13	148	177	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000160	Biological Process	phosphorelay signal transduction system
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 602 aa Download sequence Send to blast
MSTVTTTGVM KSGDVVSNQF PAGLRVLVVD DDPTSFVLVV VSVTKCNRAE TALSLLRENK 60 NGFDIVISDV HMPDMDGFKL LEHIGLEMDL PVIMMSADDG KSVVMKGVTH GACDYLIKPV 120 RIEALKNIWQ HVVRKKKNEW KDAEQSGKAV PKKILELMNV PGLTRENVAS HLQKYRLYLR 180 RLSGVSQHQN NMNNSFLGSQ EATFGTISSI SGIDLQTLAV AGQLPAQSLA TLQAAGLGRS 240 TAKAGVPMPI MDQRNLFSFE NPRVRFGEGQ QQHLSSSKPM NLLLGIPTNM EPKQLANLHQ 300 STQSIASLNM RVNASAPQGN PLLMQMPQSQ PRGQMLSENT GPRVPRLPSS LGQPNVSNGI 360 SNGFLGRNGI AGNNRGPAYN PVPPNSSLLS FPMNQSSEMS VNNSLPLGST PGMSSITTKG 420 SFQEEVTSGI KTSGGFPSYD IFNELHHHKS HDWEITNPGL TYSAPHHANP LQGNIDVSPS 480 VLVHQGFSST QQTGQSRDAT LIGKSMFSVG QGSEQDNLQN AVQHLHPLLV DNSVRVKSER 540 IPDASSQTNL FPDHYGQEDL MSALLKQQEG MGPAESEFEF DAYSLDNIPD LVGVKYSDFW 600 E*

Sequence ? help Back to Top

Protein Sequence Length: 602 aa Download sequence Send to blast

MSTVTTTGVM KSGDVVSNQF PAGLRVLVVD DDPTSFVLVV VSVTKCNRAE TALSLLRENK  60
NGFDIVISDV HMPDMDGFKL LEHIGLEMDL PVIMMSADDG KSVVMKGVTH GACDYLIKPV  120
RIEALKNIWQ HVVRKKKNEW KDAEQSGKAV PKKILELMNV PGLTRENVAS HLQKYRLYLR  180
RLSGVSQHQN NMNNSFLGSQ EATFGTISSI SGIDLQTLAV AGQLPAQSLA TLQAAGLGRS  240
TAKAGVPMPI MDQRNLFSFE NPRVRFGEGQ QQHLSSSKPM NLLLGIPTNM EPKQLANLHQ  300
STQSIASLNM RVNASAPQGN PLLMQMPQSQ PRGQMLSENT GPRVPRLPSS LGQPNVSNGI  360
SNGFLGRNGI AGNNRGPAYN PVPPNSSLLS FPMNQSSEMS VNNSLPLGST PGMSSITTKG  420
SFQEEVTSGI KTSGGFPSYD IFNELHHHKS HDWEITNPGL TYSAPHHANP LQGNIDVSPS  480
VLVHQGFSST QQTGQSRDAT LIGKSMFSVG QGSEQDNLQN AVQHLHPLLV DNSVRVKSER  540
IPDASSQTNL FPDHYGQEDL MSALLKQQEG MGPAESEFEF DAYSLDNIPD LVGVKYSDFW  600
E*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Regulates SHY2 by binding to its promoter (PubMed:19039136). Involved in the root-meristem size determination through the regulation of cell differentiation (PubMed:17363254). {ECO:0000269\|PubMed:11574878, ECO:0000269\|PubMed:11691951, ECO:0000269\|PubMed:17363254, ECO:0000269\|PubMed:19039136}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang11g16770.3

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by gibberellin. {ECO:0000269\|PubMed:20605455}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017405931.1	0.0	PREDICTED: two-component response regulator ARR2-like
Refseq	XP_017405938.1	0.0	PREDICTED: two-component response regulator ARR2-like
Refseq	XP_017405944.1	0.0	PREDICTED: two-component response regulator ARR2-like
Swissprot	Q940D0	2e-85	ARR1_ARATH; Two-component response regulator ARR1
TrEMBL	A0A445K107	0.0	A0A445K107_GLYSO; Two-component response regulator
STRING	XP_007154337.1	0.0	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G16857.2	3e-87	response regulator 1

Publications ? help Back to Top
Bürkle L,Meyer S,Dortay H,Lehrach H,Heyl A In vitro recombination cloning of entire cDNA libraries in Arabidopsis thaliana and its application to the yeast two-hybrid system. Funct. Integr. Genomics, 2005. 5(3): p. 175-83 [PMID:15714319] Moubayidin L, et al. Spatial coordination between stem cell activity and cell differentiation in the root meristem. Dev. Cell, 2013. 26(4): p. 405-15 [PMID:23987513] Takahashi N, et al. Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots. Curr. Biol., 2013. 23(18): p. 1812-7 [PMID:24035544] Kurepa J,Li Y,Perry SE,Smalle JA Ectopic expression of the phosphomimic mutant version of Arabidopsis response regulator 1 promotes a constitutive cytokinin response phenotype. BMC Plant Biol., 2014. 14: p. 28 [PMID:24423196] Cortleven A, et al. A novel protective function for cytokinin in the light stress response is mediated by the Arabidopsis histidine kinase2 and Arabidopsis histidine kinase3 receptors. Plant Physiol., 2014. 164(3): p. 1470-83 [PMID:24424319] Marín-de la Rosa N, et al. Genome Wide Binding Site Analysis Reveals Transcriptional Coactivation of Cytokinin-Responsive Genes by DELLA Proteins. PLoS Genet., 2015. 11(7): p. e1005337 [PMID:26134422] D'Alessandro S,Golin S,Hardtke CS,Lo Schiavo F,Zottini M The co-chaperone p23 controls root development through the modulation of auxin distribution in the Arabidopsis root meristem. J. Exp. Bot., 2015. 66(16): p. 5113-22 [PMID:26163704] Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024] Jiang L, et al. Strigolactones spatially influence lateral root development through the cytokinin signaling network. J. Exp. Bot., 2016. 67(1): p. 379-89 [PMID:26519957] Moubayidin L, et al. A SCARECROW-based regulatory circuit controls Arabidopsis thaliana meristem size from the root endodermis. Planta, 2016. 243(5): p. 1159-68 [PMID:26848984] Muraro D, et al. A multi-scale model of the interplay between cell signalling and hormone transport in specifying the root meristem of Arabidopsis thaliana. J. Theor. Biol., 2016. 404: p. 182-205 [PMID:27157127] Cortleven A, et al. Cytokinin Regulates the Etioplast-Chloroplast Transition through the Two-Component Signaling System and Activation of Chloroplast-Related Genes. Plant Physiol., 2016. 172(1): p. 464-78 [PMID:27388681] Kobayashi K, et al. Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling. Plant Physiol., 2017. 173(4): p. 2340-2355 [PMID:28193764] Zhang TQ, et al. A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration. Plant Cell, 2017. 29(5): p. 1073-1087 [PMID:28389585] Kushwah S,Laxmi A The interaction between glucose and cytokinin signaling in controlling Arabidopsis thaliana seedling root growth and development. Plant Signal Behav, 2017. 12(5): p. e1312241 [PMID:28467152] Meng WJ, et al. Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL. Plant Cell, 2017. 29(6): p. 1357-1372 [PMID:28576846] Kobayashi K,Iwase A Simultaneous but spatially different regulation of non-photosynthetic callus formation and photosynthetic root development after shoot removal. Plant Signal Behav, 2017. 12(6): p. e1338999 [PMID:28594268] Liu B,De Storme N,Geelen D Cold interferes with male meiotic cytokinesis in Arabidopsis thaliana independently of the AHK2/3-AHP2/3/5 cytokinin signaling module. Cell Biol. Int., 2017. 41(8): p. 879-889 [PMID:28618065] Zhang F,May A,Irish VF Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL. Trends Plant Sci., 2017. 22(10): p. 815-817 [PMID:28886911] Yan Z, et al. Type B Response Regulators Act As Central Integrators in Transcriptional Control of the Auxin Biosynthesis Enzyme TAA1. Plant Physiol., 2017. 175(3): p. 1438-1454 [PMID:28931628] Rong XF, et al. Type-B ARRs Control Carpel Regeneration Through Mediating AGAMOUS Expression in Arabidopsis. Plant Cell Physiol., 2018. 59(4): p. 756-764 [PMID:29186581] Bustillo-Avendaño E, et al. Regulation of Hormonal Control, Cell Reprogramming, and Patterning during De Novo Root Organogenesis. Plant Physiol., 2018. 176(2): p. 1709-1727 [PMID:29233938] Waldie T,Leyser O Cytokinin Targets Auxin Transport to Promote Shoot Branching. Plant Physiol., 2018. 177(2): p. 803-818 [PMID:29717021]