PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang11g18210.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

NAC

Protein Properties

Length: 248aa MW: 29022.3 Da PI: 6.6934

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang11g18210.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	161.8	2.5e-50	53	178	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 +pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekewyf+++rd+ky++g+r+nr+t+sgyWkatg d+ + +++ Vang11g18210.1 53 MPGFRFHPTEEELVEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPALAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTEN 146 79*************************.89***********8778899************************************* PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 + +glkktLvfy+g+apkg +t+W+m+eyrl Vang11g18210.1 147 FRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRL 178 ****************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	51.087	52	194	IPR003441	NAC domain
SuperFamily	SSF101941	9.55E-53	52	185	IPR003441	NAC domain
Pfam	PF02365	1.3E-25	54	178	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MAIAAANSSP TMSLSQSQSQ EDVTTTSTTN DNTNSNNNNN DNKPDDHEHD MVMPGFRFHP 60 TEEELVEFYL RRKVEGKRFN VELITFLDLY RYDPWELPAL AAIGEKEWYF YVPRDRKYRN 120 GDRPNRVTTS GYWKATGADR MIRTENFRSI GLKKTLVFYS GKAPKGIRTS WIMNEYRLPQ 180 HETERYQKQQ YYNVQSHPNQ FSTLLMQPSP VVSLSSLPNP LPTTFSDRLW EWNPIPEPPN 240 QEYSNMSF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-54	54	178	19	142	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-54	54	178	19	142	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-54	54	178	19	142	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-54	54	178	19	142	NO APICAL MERISTEM PROTEIN
3swm_A	5e-54	54	178	22	145	NAC domain-containing protein 19
3swm_B	5e-54	54	178	22	145	NAC domain-containing protein 19
3swm_C	5e-54	54	178	22	145	NAC domain-containing protein 19
3swm_D	5e-54	54	178	22	145	NAC domain-containing protein 19
3swp_A	5e-54	54	178	22	145	NAC domain-containing protein 19
3swp_B	5e-54	54	178	22	145	NAC domain-containing protein 19
3swp_C	5e-54	54	178	22	145	NAC domain-containing protein 19
3swp_D	5e-54	54	178	22	145	NAC domain-containing protein 19
4dul_A	5e-54	54	178	19	142	NAC domain-containing protein 19
4dul_B	5e-54	54	178	19	142	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269\|PubMed:17653269}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00257	DAP	Transfer from AT2G02450	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang11g18210.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269\|PubMed:17653269}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	1e-164	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003550460.1	1e-123	NAC domain-containing protein 35
Refseq	XP_028209593.1	1e-123	NAC domain-containing protein 35-like
Swissprot	Q9ZVP8	9e-94	NAC35_ARATH; NAC domain-containing protein 35
TrEMBL	A0A445FZS3	1e-122	A0A445FZS3_GLYSO; NAC domain-containing protein 35 isoform A
TrEMBL	K7MJ70	1e-122	K7MJ70_SOYBN; Uncharacterized protein
STRING	GLYMA17G00650.2	1e-122	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7203	31	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.1	2e-94	NAC domain containing protein 35

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Okajima K Molecular mechanism of phototropin light signaling. J. Plant Res., 2016. 129(2): p. 149-57 [PMID:26815763] Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii. J Phys Chem B, 2018. 122(6): p. 1801-1815 [PMID:29355019]