PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang1259s00010.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NAC
Protein Properties Length: 57aa    MW: 6249.26 Da    PI: 9.2411
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang1259s00010.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM37.19.6e-1225378126
               NAM  78 tksgyWkatgkdkevlsk...kgelvglkktLvfykgrapkgektdWvmhey 126
                       t sg+Wkat  dk+++s    ++  + lkkt  +y+g+a kg k  W+mh+ 
  Vang1259s00010.1   2 TGSGFWKATSIDKPLYSLggeGNDCIRLKKTVLYYRGSAGKGIKNYWMMHDL 53 
                       789*************986555556*************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100516.176156IPR003441NAC domain
SuperFamilySSF1019411.11E-10253IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 57 aa     Download sequence    Send to blast
LTGSGFWKAT SIDKPLYSLG GEGNDCIRLK KTVLYYRGSA GKGIKNYWMM HDLTCC*
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang1259s00010.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-90AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
GenBankAP0150371e-90AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
GenBankAP0150981e-90AP015098.1 Vigna angularis var. angularis DNA, scaffold: Scaffold_0054, complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028247065.14e-25transcription factor JUNGBRUNNEN 1-like
SwissprotQ9ZVH07e-17FEZ_ARATH; Protein FEZ
TrEMBLA0A445JFW18e-24A0A445JFW1_GLYSO; Transcription factor JUNGBRUNNEN 1
STRINGGLYMA15G40950.14e-24(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.13e-19NAC family protein
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]