PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang1570s00010.1
Common NameLR48_Vigan06g042200
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HD-ZIP
Protein Properties Length: 219aa    MW: 25186.2 Da    PI: 7.6209
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang1570s00010.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.33.2e-1956110357
                       --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
          Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                       +++++++eq++ Le+ F +++++  e++ +LA +lgL+ rqV vWFqNrRa++k+
  Vang1570s00010.1  56 RKRKLSAEQVNLLEQNFGNEHKLESERKDRLALELGLDPRQVAVWFQNRRARWKN 110
                       45589************************************************95 PP
2HD-ZIP_I/II114.94.8e-3755147193
       HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                       ++kr+ls+eqv+lLE++F +e+kLe+erK +la eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk++++a   e++rLe+ev +L+++l+e
  Vang1570s00010.1  55 NRKRKLSAEQVNLLEQNFGNEHKLESERKDRLALELGLDPRQVAVWFQNRRARWKNKKLEEEYSHLKKSHEANLLEKCRLETEVLKLKDQLSE 147
                       58****************************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.10351111IPR001356Homeobox domain
SMARTSM003892.7E-1754115IPR001356Homeobox domain
PfamPF000462.0E-1656110IPR001356Homeobox domain
SuperFamilySSF466893.12E-1856120IPR009057Homeodomain-like
CDDcd000862.47E-1556112No hitNo description
Gene3DG3DSA:1.10.10.601.6E-2058118IPR009057Homeodomain-like
PRINTSPR000313.6E-58291IPR000047Helix-turn-helix motif
PROSITE patternPS00027086109IPR017970Homeobox, conserved site
PRINTSPR000313.6E-591107IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MNHRPFQDNM MFIPQLYPAD APYTQIIAQQ GESKKPKRRR GKKNKGGENG ASEANRKRKL  60
SAEQVNLLEQ NFGNEHKLES ERKDRLALEL GLDPRQVAVW FQNRRARWKN KKLEEEYSHL  120
KKSHEANLLE KCRLETEVLK LKDQLSEAEK EIQRLLESGD RVPSNSSSSS QSQSQSQSME  180
AVDPAFFGVF GVDGYDDDVF YGPETHCINA LEWINLYM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13542PKRRRGKK
23758RRRGKKNKGGENGASEANRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00473DAPTransfer from AT4G36740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang1570s00010.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017426828.11e-162PREDICTED: homeobox-leucine zipper protein ATHB-40
SwissprotO232082e-69ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBLA0A0L9UQY21e-161A0A0L9UQY2_PHAAN; Uncharacterized protein
TrEMBLA0A0S3T4D01e-161A0A0S3T4D0_PHAAN; Uncharacterized protein
STRINGXP_007156908.11e-123(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47893257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.16e-57homeobox protein 40
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  2. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]