PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang2009s00010.1
Common NameLR48_Vigan55s000300
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 168aa    MW: 19531.2 Da    PI: 8.9319
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang2009s00010.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.22.9e-05322120
                      EEETTTTEEESSHHHHHHHH CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHi 20
                      ++C++C+k+F r  n++ H+
  Vang2009s00010.1  3 FSCSICSKTFIRYNNMQLHM 22
                      89*****************9 PP
2zf-C2H218.65.1e-0687109123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       + C +Cgk+F  k + ++H +t+
  Vang2009s00010.1  87 FMCRKCGKTFAVKGDWRSHEKTC 109
                       89******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.66E-5228No hitNo description
Gene3DG3DSA:3.30.160.606.8E-5325IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.533330IPR007087Zinc finger, C2H2
SMARTSM003550.12325IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280525IPR007087Zinc finger, C2H2
SMARTSM003551205082IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.6E-773108IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.47E-773108No hitNo description
SMARTSM003553587107IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.89187108IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MQFSCSICSK TFIRYNNMQL HMWSHGSEFR KETHALKGTQ STTMLRLPCY CCAHGCEYNI  60
NNPTAKPLKD FRTLQRHYKR RHGTKPFMCR KCGKTFAVKG DWRSHEKTCG KLWYCTCDSY  120
FKNQRSLNKD HIRSFGKGHN PHPPFEALED EKECITGSDE DEINAHA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang2009s00010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
GenBankAP0150570.0AP015057.1 Vigna angularis var. angularis DNA, scaffold: Scaffold_0013, complete sequence, cultivar: Shumari.
GenBankAP0152070.0AP015207.1 Vigna angularis var. angularis DNA, scaffold: Scaffold_0163, complete sequence, cultivar: Shumari.
GenBankAP0154350.0AP015435.1 Vigna angularis var. angularis DNA, scaffold: Scaffold_0391, complete sequence, cultivar: Shumari.
GenBankAP0155920.0AP015592.1 Vigna angularis var. angularis DNA, scaffold: Scaffold_0548, complete sequence, cultivar: Shumari.
GenBankAP0157600.0AP015760.1 Vigna angularis var. angularis DNA, scaffold: Scaffold_0716, complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017411645.11e-125PREDICTED: zinc finger protein WIP3-like
RefseqXP_017442996.11e-124PREDICTED: zinc finger protein WIP3-like
SwissprotQ9SGD15e-80ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A0L9T3R51e-123A0A0L9T3R5_PHAAN; Uncharacterized protein
STRINGGLYMA12G09400.11e-100(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.12e-82WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]