PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang3156s00010.1

Common Name

LR48_Vigan01g016200

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

GRAS

Protein Properties

Length: 133aa MW: 15242.7 Da PI: 4.7811

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang3156s00010.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	46.3	7.3e-15	13	113	197	296
GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe....adhnsesFlerflealeyysalfdsl.eaklpreseerik 284 + gE+++Vn+++ + ++++s sl + ++L+ v +l +++vv ve+e + + s sF+e f+eal++ysa+ dsl ++ ++++ + + Vang3156s00010.1 13 EVGETVIVNCMI-DQWMPNRSFSLVK---TFLDGVTKLWSRLVVSVEEElfnfSRLKSMSFVEFFCEALHHYSAVCDSLgSSVWGSHKMASRL 101 459*******.5678899999999...****************8775556999****************55555666689999 PP GRAS 285 vErellgreivn 296 +E+e+lg +i + Vang3156s00010.1 102 IEKEILGLRILD 113 9*99998875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	2.5E-12	13	113	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 133 aa Download sequence Send to blast
MMMEREEDIE GIEVGETVIV NCMIDQWMPN RSFSLVKTFL DGVTKLWSRL VVSVEEELFN 60 FSRLKSMSFV EFFCEALHHY SAVCDSLGSS VWGSHKMASR LIEKEILGLR ILDSAKFLVS 120 LFGGGYWVQF EKG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang3156s00010.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015038	0.0	AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017414142.1	5e-81	PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBL	A0A0L9TJ14	1e-79	A0A0L9TJ14_PHAAN; Uncharacterized protein
STRING	XP_007159815.1	8e-70	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13148	21	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59450.1	2e-07	GRAS family protein

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]