PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0001s0396.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family E2F/DP
Protein Properties Length: 501aa    MW: 51467.3 Da    PI: 5.0039
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0001s0396.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP832.5e-26110175171
              E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                          r++ sL++lt+kfl+l+ ++++g+++ln++a++L   +v  ++RRiYDi+NVLe+++liekk+kn+irwkg
  Vocar.0001s0396.1.p 110 RHDCSLGMLTKKFLTLIDNATDGVLDLNKAAETL---KV--QKRRIYDITNVLEGVGLIEKKSKNNIRWKG 175
                          5688******************************...88..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.6E-28107176IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.1E-33110175IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023196.3E-24112175IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.0E-16113176IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF1440746.8E-29187293No hitNo description
CDDcd146603.09E-44187294No hitNo description
PfamPF164217.7E-30191292IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010090Biological Processtrichome morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051302Biological Processregulation of cell division
GO:0051446Biological Processpositive regulation of meiotic cell cycle
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MEGRHQKRPN SAEAFYEAPS KRQATGHNVY SQATGHSTAD DDEDYDPRLH HHHHHDNGQD  60
DQEQSSYGVG DDDADDDPQS TSEQQTPSRV VKRKSGRAAG SPGSLTSGCR HDCSLGMLTK  120
KFLTLIDNAT DGVLDLNKAA ETLKVQKRRI YDITNVLEGV GLIEKKSKNN IRWKGASTAA  180
DRETEPETAK LRQDMKSLED QERSLDDHIR IMTGAIQALS DNPLNKPRLY VTDEDVTSLP  240
CFANDTIFAV KAPPGTTLEV PDPREAADPR DGQMRYRIVL RSTRGPIDVY LVQHTNNGGT  300
TSQQGAAAPS ATSAEPAGST VGPAERGGGG GGGSASGAVG PGNGGGAASG GGAGAAAAAA  360
ADAGGSGGCG GGISAPPTAV KPELVPSGRS AGPGLVCAGL ASPSFPFALP GTSPLSAAAG  420
ANGPSSFFNS VLNSPTGAVA VDPLHMGPLT SPGLAGRVSG TAGGVGEMDP ATWYDGPHEP  480
PLISTFYQGE DDDNFFTAPL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A4e-23110175773PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142148LKVQKRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ8983681e-128FJ898368.1 Volvox carteri f. nagariensis transcription factor E2F1 (E2F1) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002948442.10.0E2F transcription factor family
TrEMBLD8TPZ90.0D8TPZ9_VOLCA; E2F transcription factor family
STRINGXP_002948442.10.0(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP32581314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.33e-68E2F transcription factor 1