PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0001s0782.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family MYB
Protein Properties Length: 1394aa    MW: 139822 Da    PI: 4.4455
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0001s0782.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.61.4e-131671148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrwqkyl 48
                         +g WT+eEd  l+++v ++G g+W+ Iar ++        +gR +kqc++rw+ +l
  Vocar.0001s0782.1.p 16 KGGWTAEEDAHLARLVLEYGEGNWSPIARALNvlmknpesTGRIGKQCRERWNHHL 71
                         688*************************************************9886 PP
2Myb_DNA-binding54.52.7e-1777119145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          +g+W +eE+ ll+da+++lG++ W+ Iar+++ gR+++ +k++w+
  Vocar.0001s0782.1.p  77 KGPWGPEEEILLADAHRRLGNK-WSDIARCIP-GRSENAVKNHWN 119
                          79********************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.3651171IPR017930Myb domain
SuperFamilySSF466891.47E-2614118IPR009057Homeodomain-like
SMARTSM007171.5E-111573IPR001005SANT/Myb domain
PfamPF002494.8E-121670IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-191878IPR009057Homeodomain-like
CDDcd001672.83E-91971No hitNo description
PROSITE profilePS5129422.18772126IPR017930Myb domain
SMARTSM007171.0E-1476124IPR001005SANT/Myb domain
PfamPF002493.2E-1577119IPR001005SANT/Myb domain
CDDcd001672.93E-1079122No hitNo description
Gene3DG3DSA:1.10.10.602.4E-1979126IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1394 aa     Download sequence    Send to blast
MSKRCAGPRH PIAKQKGGWT AEEDAHLARL VLEYGEGNWS PIARALNVLM KNPESTGRIG  60
KQCRERWNHH LSPGLRKGPW GPEEEILLAD AHRRLGNKWS DIARCIPGRS ENAVKNHWNA  120
TLRKRLLDNE VGGPLKQYLD TLNLAVPPRK RSGGSGGKGG QGGGRRTKAR RASREREDSG  180
SDDASEGLGG LEDCDSDAPE PTRRRRPAAR GGRGSMRALD ADGGRGGAGG SSSGAVGGDL  240
NLGASAAAGR SWPPSPATRR GGAGSSGGAS GSGGGGRGVN SRGGVAPLGG ARRTGGSSGA  300
GGNSTPRGNG GISDAGGGGG IIGGRDSDGV PIGASAAVQA PVQARTAPKR LSCNGLGSGA  360
TGGGTIIKLG PYSAAAAARA AEMAKARAAA DAAAAAAIGN YRRRRSVRAA AQVGNERLRS  420
LAEAEQREAE EAAEDADAAA ADAADAAAAS AEPPVKAEVK LEEDYLGDID FQLDDETLDD  480
LFAYGGASCS DRDADRDAAE SVGDGVDDDY DDDDGDGDND DDDGDNDDDD DDNEEDEEEE  540
DDFYLESDGE CDGGAGEAEM SDMQLSVSGL VPDGGANPCP GAATATATAA AASIAASAAV  600
AAAAAAAAMS AVAAKRRSSS GFPSTTSAAA AAAAAAAALL PDSFLAAKPP AAAAAGGGRP  660
DGGGGDDVDG ELYGRAAPIR SLRRGAERAF DNSPVQVLAV QKARRTSYGS GAAGTARLSA  720
FDAASRRVSS ADGFGAAAIG DESADALTAA INAAAAAAAA VSADETPFRY VRKEEGANAP  780
GDEGLMAASN DAFVLAGAGA LCHVASDSAT VNMRPSADGT GGTLPLSAWA SPPPLNPRNS  840
SGDLGAAAAS AAMPAALLLL PPPPPPANIH IHSPGLHDLL DFDGMVSPLA AAVGGALEEQ  900
VDGAVAAAAT MATGGGGGGS RVGSGGGGMD SFAGTLNNVA DISSGITSVG SPVSDLGDIF  960
DSYIAFGGIE DAKLCTGATC EEAAAAAVAV AAAAAADGGQ ADNEILGAGD IMYGGVSLKR  1020
ESSFTGCGLR PLLPPSMESS SAGNQFQISN FLATFQGPAA PALPPPPAAP APPLQLPWTK  1080
MGEPAAAAAP PPPPPPPLLS AVAITPASPP VPWPAVPTQQ GGIPVAPMDM PYVAGGGSSG  1140
AMSPLPGLTS TGLLQPTSPF AWLGQQPAAS VLQPPPPPVQ QMQMQAMYGG GAPAVQLPPP  1200
SGLITQMQQQ QAVQAQEQQQ PQQSAERVSS YPVGIGAASY PGGSNMPFGG MYGALPYPPA  1260
VGHPQAVAVP VPVPVPVPQM DQQYMQQYMQ QYMQQYMQQM HIQMHQALLQ QLSLPPDPQP  1320
ASQSTGIKVP EVNLLEKSNF RLNLILDMEA MRTIATKVEG SSLHPVGFCA QPPADNNNNN  1380
DNDNDNAGNA ATR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-36161264105MYB PROTO-ONCOGENE PROTEIN
1h88_C3e-351612658159MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-351612658159MYB PROTO-ONCOGENE PROTEIN
1mse_C5e-36161264105C-Myb DNA-Binding Domain
1msf_C5e-36161264105C-Myb DNA-Binding Domain
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1656664GGRPDGGGG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00482DAPTransfer from AT5G02320Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1516114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.23e-34myb domain protein 3r-5