PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0001s0838.2.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family GATA
Protein Properties Length: 756aa    MW: 77241.6 Da    PI: 7.0178
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0001s0838.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.72.5e-16709740132
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrk 32 
                          C++Cgt +Tp WR gp g+ktLCnaCG++y k
  Vocar.0001s0838.2.p 709 CTQCGTQTTPVWRAGPHGPKTLCNACGVRYMK 740
                          *****************************966 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577162.09E-12702743No hitNo description
PROSITE profilePS5011412.189703738IPR000679Zinc finger, GATA-type
SMARTSM004017.8E-14703754IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.106.3E-13707740IPR013088Zinc finger, NHR/GATA-type
PfamPF003202.1E-14709740IPR000679Zinc finger, GATA-type
PROSITE patternPS003440709734IPR000679Zinc finger, GATA-type
CDDcd002021.92E-11709753No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 756 aa     Download sequence    Send to blast
MACVQPMHIL DDGDAIFFGD GDLFGNSVPC LAGELELQVQ SYEGAGDVPV GDSSEGKSFS  60
LTKDSGGSSL SALAAADFGN PDFMDNVSLD DLAAADHYGH TLCGRQSTAD STAAADSGRQ  120
LEACNQWTGA GADTGVVKLQ SKQGLTGGQD GYGHAGQESS DCDMSHTHGD GESSGVGPGK  180
SVALGSSHSE ASEDNTAGVA PGATSGRDEE HISMPNYGLS LSRLTHSGAQ TAPLAGAVIK  240
VRQTQSRTTH IEQDKQLQPQ QQQQQLQTVE AGEQQRQEQP VQQTAAGELQ RGQRTRAFSV  300
DNFALIGGGT AAATGGEGGS SSACMDSTAA AEGLRRAHVY RSYSYVAPDT LPMDFSLGCG  360
NSVGGHFTLG SRGRCASLNE TQLRRHWLQE GELLTPQLPP SVSELELLEL PEDSIPIRPS  420
ATGTLLGQRL EQQLQDEHQQ SAACGMMSGS GARSAGSGLV QFKGSGGSSG TGATQPGVSV  480
TVKRKIITSP SPLQYPRSTK TRQSAASAAG AAAPGATLKG QSPKRVKVSG AVPPWQDGTA  540
GAAPSSAGLL AGWHPPRPTA NSGAMKTVRS VPANMNSYLD GVEVTVQPLN PPGSSSTPNS  600
SDASVASAST THPGFAARGP FFDPTLALSA LAGPFGKGVK SKAAGQVQAP GLPPGVGMSP  660
MVGSFAAVMV GPDGKRLGPL PSVPKPRKRA SPNGNPPKAP APNPNGHCCT QCGTQTTPVW  720
RAGPHGPKTL CNACGVRYMK VAKGNVAPTP RRQQH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001689549.12e-87predicted protein, partial
TrEMBLA0A2K3E6H81e-152A0A2K3E6H8_CHLRE; Uncharacterized protein
STRINGEDP092877e-87(Chlamydomonas reinhardtii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.14e-07GATA transcription factor 16