PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0001s1150.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family Whirly
Protein Properties Length: 227aa    MW: 24085.7 Da    PI: 10.0616
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0001s1150.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly69.94.4e-22682102137
               Whirly   2 vyktkaalkvkavrptfealdsgnlklkraGglllelana.......ta......erkydWekkqsfalsatevaelvd...laskesce 75 
                          +ykt+aa+ v    p+f++   g  +l+r+G +lle+ana       ta      +r+y+W++k sfals+ e+++++    +as +   
  Vocar.0001s1150.1.p  68 IYKTRAAMAVRLLPPSFTTE-NGYKTLERDGVMLLEFANAnpgqpsgTApaaggiNRTYNWSNKISFALSPSELGTMLAgdaIASDKGLV 156
                          9****************998.89999***********9974333333222233446*******************98744589******* PP

               Whirly  76 ffhdpaakgsneGkvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137
                          ++hdp++  ++ G+  k l ++ +pdG+  f +ls       + +++s+Pvs++ef vl+sl
  Vocar.0001s1150.1.p 157 MYHDPTK-LGKVGEPMKRLTMKQMPDGAISF-SLS------AAPDNISLPVSRGEFEVLKSL 210
                          *****86.5678999************8544.444......45779*************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.101.5E-4956225IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544479.42E-2160224IPR009044ssDNA-binding transcriptional regulator
PfamPF085361.1E-3968210IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0032211Biological Processnegative regulation of telomere maintenance via telomerase
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0045910Biological Processnegative regulation of DNA recombination
GO:0009508Cellular Componentplastid chromosome
GO:0009570Cellular Componentchloroplast stroma
GO:0003697Molecular Functionsingle-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003723Molecular FunctionRNA binding
GO:0042162Molecular Functiontelomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MLCSAMLGKA SPTCGRVRVS QRAFSVAAQS LSQQLSAPVS KPNYSAPSPG PRALATSSTE  60
RVYVNFHIYK TRAAMAVRLL PPSFTTENGY KTLERDGVML LEFANANPGQ PSGTAPAAGG  120
INRTYNWSNK ISFALSPSEL GTMLAGDAIA SDKGLVMYHD PTKLGKVGEP MKRLTMKQMP  180
DGAISFSLSA APDNISLPVS RGEFEVLKSL AHYAIPRLLG FDAAFQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1l3a_A3e-205722433193p24: plant transcriptional regulator PBF-2
1l3a_B3e-205722433193p24: plant transcriptional regulator PBF-2
1l3a_C3e-205722433193p24: plant transcriptional regulator PBF-2
1l3a_D3e-205722433193p24: plant transcriptional regulator PBF-2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002946519.11e-116hypothetical protein VOLCADRAFT_86539
TrEMBLD8TIY31e-115D8TIY3_VOLCA; Uncharacterized protein
STRINGXP_002946519.11e-115(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP20261516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14410.11e-20ssDNA-binding transcriptional regulator