PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vocar.0001s1594.1.p

Organism

Volvox carteri

Taxonomic ID

3067

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox

Family

MYB_related

Protein Properties

Length: 1082aa MW: 111353 Da PI: 7.0537

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vocar.0001s1594.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.6	1.4e-08	62	106	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r W+ E+ +l++ + G+ W++Ia++++ gR++ ++k+ w++ Vocar.0001s1594.1.p 62 RPVWSRLEEAILARQHSIRGNS-WSAIAEHLP-GRSASEVKNIWHST 106 678***************99.*****.*******99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.174	57	111	IPR017930	Myb domain
SuperFamily	SSF46689	3.91E-10	57	110	IPR009057	Homeodomain-like
SMART	SM00717	9.9E-8	61	109	IPR001005	SANT/Myb domain
Pfam	PF00249	1.7E-7	62	105	IPR001005	SANT/Myb domain
CDD	cd00167	7.55E-6	65	107	No hit	No description
Gene3D	G3DSA:1.10.10.60	6.2E-12	65	108	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1082 aa Download sequence Send to blast
MGEEFGEQVG LGQEDGRWEP QEACSAPGES SDYSDGPAVG RGSGAGRGTC EGGNLQRRRR 60 RRPVWSRLEE AILARQHSIR GNSWSAIAEH LPGRSASEVK NIWHSTLRSK KLKSRSLLRA 120 YAREVQERGD STAARLEAFR SAVKLTKSNE DAGTDACMSD MVGHGRARPL PSSDQDEEEP 180 AGDGSPHQEP QFADSAEATY LAKKALPKPC PTGSSEGADA ASLTSDPTSP LHNPALRLSS 240 RAQKGGAHDL GGQEGSPQGA LGLSALPPPP QRSRAAAGCE LPPRARRPDA KMMDNNGAGA 300 AVPGSPAEQL RAQRLGLHWP QGGPGRGLLD PAAARCVDDA ALDFATAAAA ALEPHGVSLQ 360 HLMLRQQQQR QQQLQQQERS WQERTGGRAT SGSTPSARGE AGEGGEARRR FVGAGGGGEP 420 RMAMDEGMGL DLSGAGVGAG AEELARLQTL LMFQSAMERG QLGGLQDAAA AAAAGSGAWM 480 SPRRPAGLAQ ALAQAQMQAM ALAQAQASLE ADEVHRLALM RHYFALQMQQ GGGAAAAAAL 540 GGVAGDTSGA SSGWRFTEAR SGGSRGVQRD APRGSAAHNA TGRRAYAPAQ GSSAAAAAAA 600 STTSCEDYFG DRGAPLPPMP APGGAITCLG PAVMAALAAS AAVPGFDPYA MVPPQYLPPS 660 LEQMGALLGG GGNGAVERLL GAHAAAAATR AAAAEAAAVA GRMAGLHPAG LGPWGGAAPQ 720 DSMEAEDPGV ATGPSSADTL TAVDLRASDE APSADGKLQG RPAPAVVPPH GAEARRRTGA 780 KRRAEPSEDA DAPWGGQRLK DGGGGSVSRL AGGLDNPHAQ GLPSGPVAWP PLPFFGGIRG 840 NPIGNLYGNP LDQHDFALQA AWAADGNVGG GMVNGFAAAA SGFGAAPGAA ALGALRGAGP 900 RGLGAAADRV SMPGSAAERR WDVAALHGGG GGGGLAEGGG ALDRKPPRRR PQRQPREDVD 960 DVEDDEPQQQ QQHPELPQQR QQQQVKPNNK QEAEEHQEHQ QHRRRRPEQK QQQRQQQQQQ 1020 QIKSEDQKQG LHVDDEAVAA DLSICDVARA LLSFSQQKPR PATGPAQGRG SSSGRTARSS 1080 E*

Sequence ? help Back to Top

Protein Sequence Length: 1082 aa Download sequence Send to blast

MGEEFGEQVG LGQEDGRWEP QEACSAPGES SDYSDGPAVG RGSGAGRGTC EGGNLQRRRR  60
RRPVWSRLEE AILARQHSIR GNSWSAIAEH LPGRSASEVK NIWHSTLRSK KLKSRSLLRA  120
YAREVQERGD STAARLEAFR SAVKLTKSNE DAGTDACMSD MVGHGRARPL PSSDQDEEEP  180
AGDGSPHQEP QFADSAEATY LAKKALPKPC PTGSSEGADA ASLTSDPTSP LHNPALRLSS  240
RAQKGGAHDL GGQEGSPQGA LGLSALPPPP QRSRAAAGCE LPPRARRPDA KMMDNNGAGA  300
AVPGSPAEQL RAQRLGLHWP QGGPGRGLLD PAAARCVDDA ALDFATAAAA ALEPHGVSLQ  360
HLMLRQQQQR QQQLQQQERS WQERTGGRAT SGSTPSARGE AGEGGEARRR FVGAGGGGEP  420
RMAMDEGMGL DLSGAGVGAG AEELARLQTL LMFQSAMERG QLGGLQDAAA AAAAGSGAWM  480
SPRRPAGLAQ ALAQAQMQAM ALAQAQASLE ADEVHRLALM RHYFALQMQQ GGGAAAAAAL  540
GGVAGDTSGA SSGWRFTEAR SGGSRGVQRD APRGSAAHNA TGRRAYAPAQ GSSAAAAAAA  600
STTSCEDYFG DRGAPLPPMP APGGAITCLG PAVMAALAAS AAVPGFDPYA MVPPQYLPPS  660
LEQMGALLGG GGNGAVERLL GAHAAAAATR AAAAEAAAVA GRMAGLHPAG LGPWGGAAPQ  720
DSMEAEDPGV ATGPSSADTL TAVDLRASDE APSADGKLQG RPAPAVVPPH GAEARRRTGA  780
KRRAEPSEDA DAPWGGQRLK DGGGGSVSRL AGGLDNPHAQ GLPSGPVAWP PLPFFGGIRG  840
NPIGNLYGNP LDQHDFALQA AWAADGNVGG GMVNGFAAAA SGFGAAPGAA ALGALRGAGP  900
RGLGAAADRV SMPGSAAERR WDVAALHGGG GGGGLAEGGG ALDRKPPRRR PQRQPREDVD  960
DVEDDEPQQQ QQHPELPQQR QQQQVKPNNK QEAEEHQEHQ QHRRRRPEQK QQQRQQQQQQ  1020
QIKSEDQKQG LHVDDEAVAA DLSICDVARA LLSFSQQKPR PATGPAQGRG SSSGRTARSS  1080
E*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	55	61	QRRRRRR
2	56	61	RRRRRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002956197.1	0.0	hypothetical protein VOLCADRAFT_97200
TrEMBL	D8UC48	0.0	D8UC48_VOLCA; Uncharacterized protein
STRING	XP_002956197.1	0.0	(Volvox carteri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP7765	2	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48920.1	5e-08	myb domain protein 45

Link Out ? help Back to Top
Phytozome	Vocar.0001s1594.1.p