PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vocar.0001s1620.1.p

Organism

Volvox carteri

Taxonomic ID

3067

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox

Family

MYB_related

Protein Properties

Length: 1690aa MW: 173073 Da PI: 6.3928

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vocar.0001s1620.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	35.3	2.6e-11	41	84	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r +WT eE+ ll++ ++++G+ W +Ia+ ++ gRt+ ++k+ +++ Vocar.0001s1620.1.p 41 RPAWTLEEESLLAEKHALHGNA-WMLIAKSLP-GRTPGEVKNIYNS 84 789*****************.*****.******98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.44	36	90	IPR017930	Myb domain
SuperFamily	SSF46689	3.43E-11	38	87	IPR009057	Homeodomain-like
SMART	SM00717	2.1E-9	40	88	IPR001005	SANT/Myb domain
Pfam	PF00249	6.0E-10	41	84	IPR001005	SANT/Myb domain
CDD	cd00167	5.28E-7	43	86	No hit	No description
Gene3D	G3DSA:1.10.10.60	6.9E-13	44	87	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1690 aa Download sequence Send to blast
MYSDDGTTSS DDPSPAAGRK EWSRKNEHLL KGTEKRRRRK RPAWTLEEES LLAEKHALHG 60 NAWMLIAKSL PGRTPGEVKN IYNSTLRATR QGTRSLLRAY ALAVQGREHD DDARHSAYSA 120 VLEAHEEENR LAEAEAAALV AAAAAASGHP LLANPVAGMF PMGMLQSMGI PLQIQIQPRQ 180 NWPPGVPFNI NDVQPERLNP HDQLRLALLH HHHNVQQMQL NHLSNEPLSE QEREEQQLQL 240 LQQMQLSQLQ GQQRQDGEEN PGEPGAQQQE QQQQQYQQQE GSMMHMMLTD VPPNTSTLPG 300 WAPGALQPPT GGNNPAVNKA SKTTAAAAAA AALGQLGLPA MPAAFSETAG GGCVSFPSGP 360 GVSAGVDGVL GMAGGPPSQT PLPGDGGVSA LDLSSPEHAG RGASREEPIT DGGPRLLAAG 420 DGNADRDAGT GDSSRGVAPS VAAAAAAAAA AAAAVAAAQS TGHDGARSGG GGNDGDGDIH 480 TENKPPLLLP PPLPPPLSPR QAHAAAATSR KRSSAGPPVD SAAASGPASK RPRRRYMPTV 540 RGAQTRREGL FESDGEDHGS PNPPSPARSG SPSGRRPATM GTAPPPLSQA RRAGEVGLGL 600 PSESLPRKVP PPPPQQQPQQ DQEREKEPTS AGDVKHPAQE QEGEPEVQQR MQALKLPRRS 660 SRQQQQQQQH HHQQHQQLLP LQPKQRQLVS GKDDSLMLLL AAQPELDEES AEELRRRIEK 720 EEERLIDAMA MTDIPPSPSR NMQKGLQKKV LELQRQVQRL QEDKMRLLQH EEKLRPPPPP 780 PKPRPEPPKP QEIILRSRTQ RKSARGVALA TAAVAAADLQ EDEGGEEAVE EDEEEKKKQP 840 ARPPPQLLLQ RTKADEERGR AGREKRKSAK VKRRDAEGAE EEEEEDDEEE ERREEAEAAV 900 DDDGEEWREE DYGAPREEVP PPPQPPLPVV NMSMFGRGPL GLTPSLGLPP VGDPAAYAGL 960 LEGLGRSGAL PDLPMVVLRP PDGGPPVLCL AVPISTLSPG DVPMGALPIG DLPRGSTLPP 1020 VGTLPLGGLP IGNIAAAAAA GWPPPQQPLP PPGLPFGPAM AVAGLFGSGE DRPPQLQHGP 1080 HLARHGPVAD GGGGAVTRAR ARGPGQGQSQ GQGFEALAAA AAAAAAAGSS GPSNSRRPGD 1140 RPSGAAAATT RGNSGGAATD PSSSQGYGQG QGQAQGHERG TRAAPGSSQG TAATAKGDSA 1200 GGQGGDGPPG GRWAVAAAPA NSGGGGGSAR EGGRFAKGVP RGGGSFTGGR DVVSSKAMSS 1260 PEQAAAILLA AAAGSGGGGG AGAGTGRFRK VPGAGAGGPS RGQAAPGGGG GQQWSGPQGS 1320 GPAAEADGSE NEEDPQPAAA DRRMARLPPA AASASREQRR GEASRAVPPG ADADGGHVGV 1380 GEGTRGPGGA RGGPGGGGAA AAGRAGDVGD DAGASSDEDY SDKSNDVGPG PLPGPEDFMR 1440 MFPGGFGVPP RPPFLPGGGR GMAPFMAPFM GPAFDRAAGG RPLGPDEYGV DAALNTERAY 1500 ANLLDAFPGA APRRGGGGGG GGGGSLGAAS GFGGLGPSGP GRAGAGVGGA AAASRRVAPP 1560 MLPQQMPAPA LLGLQMQLLM TQMGQPGLMP PGLVPPGGPG ARMPLQQPRG GGGSGASGHM 1620 PVPKHMPMHM PMPMHMQDHG VIPGGGGPRG RTGARPSGGP PQPQQPTGRG ARRAGTRHYE 1680 DDEDSESDE*

Sequence ? help Back to Top

Protein Sequence Length: 1690 aa Download sequence Send to blast

MYSDDGTTSS DDPSPAAGRK EWSRKNEHLL KGTEKRRRRK RPAWTLEEES LLAEKHALHG  60
NAWMLIAKSL PGRTPGEVKN IYNSTLRATR QGTRSLLRAY ALAVQGREHD DDARHSAYSA  120
VLEAHEEENR LAEAEAAALV AAAAAASGHP LLANPVAGMF PMGMLQSMGI PLQIQIQPRQ  180
NWPPGVPFNI NDVQPERLNP HDQLRLALLH HHHNVQQMQL NHLSNEPLSE QEREEQQLQL  240
LQQMQLSQLQ GQQRQDGEEN PGEPGAQQQE QQQQQYQQQE GSMMHMMLTD VPPNTSTLPG  300
WAPGALQPPT GGNNPAVNKA SKTTAAAAAA AALGQLGLPA MPAAFSETAG GGCVSFPSGP  360
GVSAGVDGVL GMAGGPPSQT PLPGDGGVSA LDLSSPEHAG RGASREEPIT DGGPRLLAAG  420
DGNADRDAGT GDSSRGVAPS VAAAAAAAAA AAAAVAAAQS TGHDGARSGG GGNDGDGDIH  480
TENKPPLLLP PPLPPPLSPR QAHAAAATSR KRSSAGPPVD SAAASGPASK RPRRRYMPTV  540
RGAQTRREGL FESDGEDHGS PNPPSPARSG SPSGRRPATM GTAPPPLSQA RRAGEVGLGL  600
PSESLPRKVP PPPPQQQPQQ DQEREKEPTS AGDVKHPAQE QEGEPEVQQR MQALKLPRRS  660
SRQQQQQQQH HHQQHQQLLP LQPKQRQLVS GKDDSLMLLL AAQPELDEES AEELRRRIEK  720
EEERLIDAMA MTDIPPSPSR NMQKGLQKKV LELQRQVQRL QEDKMRLLQH EEKLRPPPPP  780
PKPRPEPPKP QEIILRSRTQ RKSARGVALA TAAVAAADLQ EDEGGEEAVE EDEEEKKKQP  840
ARPPPQLLLQ RTKADEERGR AGREKRKSAK VKRRDAEGAE EEEEEDDEEE ERREEAEAAV  900
DDDGEEWREE DYGAPREEVP PPPQPPLPVV NMSMFGRGPL GLTPSLGLPP VGDPAAYAGL  960
LEGLGRSGAL PDLPMVVLRP PDGGPPVLCL AVPISTLSPG DVPMGALPIG DLPRGSTLPP  1020
VGTLPLGGLP IGNIAAAAAA GWPPPQQPLP PPGLPFGPAM AVAGLFGSGE DRPPQLQHGP  1080
HLARHGPVAD GGGGAVTRAR ARGPGQGQSQ GQGFEALAAA AAAAAAAGSS GPSNSRRPGD  1140
RPSGAAAATT RGNSGGAATD PSSSQGYGQG QGQAQGHERG TRAAPGSSQG TAATAKGDSA  1200
GGQGGDGPPG GRWAVAAAPA NSGGGGGSAR EGGRFAKGVP RGGGSFTGGR DVVSSKAMSS  1260
PEQAAAILLA AAAGSGGGGG AGAGTGRFRK VPGAGAGGPS RGQAAPGGGG GQQWSGPQGS  1320
GPAAEADGSE NEEDPQPAAA DRRMARLPPA AASASREQRR GEASRAVPPG ADADGGHVGV  1380
GEGTRGPGGA RGGPGGGGAA AAGRAGDVGD DAGASSDEDY SDKSNDVGPG PLPGPEDFMR  1440
MFPGGFGVPP RPPFLPGGGR GMAPFMAPFM GPAFDRAAGG RPLGPDEYGV DAALNTERAY  1500
ANLLDAFPGA APRRGGGGGG GGGGSLGAAS GFGGLGPSGP GRAGAGVGGA AAASRRVAPP  1560
MLPQQMPAPA LLGLQMQLLM TQMGQPGLMP PGLVPPGGPG ARMPLQQPRG GGGSGASGHM  1620
PVPKHMPMHM PMPMHMQDHG VIPGGGGPRG RTGARPSGGP PQPQQPTGRG ARRAGTRHYE  1680
DDEDSESDE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	33	41	EKRRRRKRP
2	34	39	KRRRRK
3	34	40	KRRRRKR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002956184.1	0.0	hypothetical protein VOLCADRAFT_97174
TrEMBL	D8UC27	0.0	D8UC27_VOLCA; Uncharacterized protein
STRING	XP_002956184.1	0.0	(Volvox carteri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP7765	2	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	9e-10	myb domain protein 3r-5

Link Out ? help Back to Top
Phytozome	Vocar.0001s1620.1.p