PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vocar.0001s1620.2.p

Organism

Volvox carteri

Taxonomic ID

3067

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox

Family

MYB_related

Protein Properties

Length: 1664aa MW: 170154 Da PI: 6.2109

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vocar.0001s1620.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.1	2.6e-10	41	79	1	41
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 r +WT eE+ ll++ ++++G+ W +Ia+ ++ gRt+ ++k Vocar.0001s1620.2.p 41 RPAWTLEEESLLAEKHALHGNA-WMLIAKSLP-GRTPGEVK 79 789*****************.*****.**9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.04	36	90	IPR017930	Myb domain
SuperFamily	SSF46689	1.14E-8	36	81	IPR009057	Homeodomain-like
SMART	SM00717	1.2E-4	40	88	IPR001005	SANT/Myb domain
Pfam	PF00249	5.8E-9	41	79	IPR001005	SANT/Myb domain
CDD	cd00167	3.23E-6	43	79	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.8E-10	44	81	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1664 aa Download sequence Send to blast
MYSDDGTTSS DDPSPAAGRK EWSRKNEHLL KGTEKRRRRK RPAWTLEEES LLAEKHALHG 60 NAWMLIAKSL PGRTPGEVKG REHDDDARHS AYSAVLEAHE EENRLAEAEA AALVAAAAAA 120 SGHPLLANPV AGMFPMGMLQ SMGIPLQIQI QPRQNWPPGV PFNINDVQPE RLNPHDQLRL 180 ALLHHHHNVQ QMQLNHLSNE PLSEQEREEQ QLQLLQQMQL SQLQGQQRQD GEENPGEPGA 240 QQQEQQQQQY QQQEGSMMHM MLTDVPPNTS TLPGWAPGAL QPPTGGNNPA VNKASKTTAA 300 AAAAAALGQL GLPAMPAAFS ETAGGGCVSF PSGPGVSAGV DGVLGMAGGP PSQTPLPGDG 360 GVSALDLSSP EHAGRGASRE EPITDGGPRL LAAGDGNADR DAGTGDSSRG VAPSVAAAAA 420 AAAAAAAAVA AAQSTGHDGA RSGGGGNDGD GDIHTENKPP LLLPPPLPPP LSPRQAHAAA 480 ATSRKRSSAG PPVDSAAASG PASKRPRRRY MPTVRGAQTR REGLFESDGE DHGSPNPPSP 540 ARSGSPSGRR PATMGTAPPP LSQARRAGEV GLGLPSESLP RKVPPPPPQQ QPQQDQEREK 600 EPTSAGDVKH PAQEQEGEPE VQQRMQALKL PRRSSRQQQQ QQQHHHQQHQ QLLPLQPKQR 660 QLVSGKDDSL MLLLAAQPEL DEESAEELRR RIEKEEERLI DAMAMTDIPP SPSRNMQKGL 720 QKKVLELQRQ VQRLQEDKMR LLQHEEKLRP PPPPPKPRPE PPKPQEIILR SRTQRKSARG 780 VALATAAVAA ADLQEDEGGE EAVEEDEEEK KKQPARPPPQ LLLQRTKADE ERGRAGREKR 840 KSAKVKRRDA EGAEEEEEED DEEEERREEA EAAVDDDGEE WREEDYGAPR EEVPPPPQPP 900 LPVVNMSMFG RGPLGLTPSL GLPPVGDPAA YAGLLEGLGR SGALPDLPMV VLRPPDGGPP 960 VLCLAVPIST LSPGDVPMGA LPIGDLPRGS TLPPVGTLPL GGLPIGNIAA AAAAGWPPPQ 1020 QPLPPPGLPF GPAMAVAGLF GSGEDRPPQL QHGPHLARHG PVADGGGGAV TRARARGPGQ 1080 GQSQGQGFEA LAAAAAAAAA AGSSGPSNSR RPGDRPSGAA AATTRGNSGG AATDPSSSQG 1140 YGQGQGQAQG HERGTRAAPG SSQGTAATAK GDSAGGQGGD GPPGGRWAVA AAPANSGGGG 1200 GSAREGGRFA KGVPRGGGSF TGGRDVVSSK AMSSPEQAAA ILLAAAAGSG GGGGAGAGTG 1260 RFRKVPGAGA GGPSRGQAAP GGGGGQQWSG PQGSGPAAEA DGSENEEDPQ PAAADRRMAR 1320 LPPAAASASR EQRRGEASRA VPPGADADGG HVGVGEGTRG PGGARGGPGG GGAAAAGRAG 1380 DVGDDAGASS DEDYSDKSND VGPGPLPGPE DFMRMFPGGF GVPPRPPFLP GGGRGMAPFM 1440 APFMGPAFDR AAGGRPLGPD EYGVDAALNT ERAYANLLDA FPGAAPRRGG GGGGGGGGSL 1500 GAASGFGGLG PSGPGRAGAG VGGAAAASRR VAPPMLPQQM PAPALLGLQM QLLMTQMGQP 1560 GLMPPGLVPP GGPGARMPLQ QPRGGGGSGA SGHMPVPKHM PMHMPMPMHM QDHGVIPGGG 1620 GPRGRTGARP SGGPPQPQQP TGRGARRAGT RHYEDDEDSE SDE*

Sequence ? help Back to Top

Protein Sequence Length: 1664 aa Download sequence Send to blast

MYSDDGTTSS DDPSPAAGRK EWSRKNEHLL KGTEKRRRRK RPAWTLEEES LLAEKHALHG  60
NAWMLIAKSL PGRTPGEVKG REHDDDARHS AYSAVLEAHE EENRLAEAEA AALVAAAAAA  120
SGHPLLANPV AGMFPMGMLQ SMGIPLQIQI QPRQNWPPGV PFNINDVQPE RLNPHDQLRL  180
ALLHHHHNVQ QMQLNHLSNE PLSEQEREEQ QLQLLQQMQL SQLQGQQRQD GEENPGEPGA  240
QQQEQQQQQY QQQEGSMMHM MLTDVPPNTS TLPGWAPGAL QPPTGGNNPA VNKASKTTAA  300
AAAAAALGQL GLPAMPAAFS ETAGGGCVSF PSGPGVSAGV DGVLGMAGGP PSQTPLPGDG  360
GVSALDLSSP EHAGRGASRE EPITDGGPRL LAAGDGNADR DAGTGDSSRG VAPSVAAAAA  420
AAAAAAAAVA AAQSTGHDGA RSGGGGNDGD GDIHTENKPP LLLPPPLPPP LSPRQAHAAA  480
ATSRKRSSAG PPVDSAAASG PASKRPRRRY MPTVRGAQTR REGLFESDGE DHGSPNPPSP  540
ARSGSPSGRR PATMGTAPPP LSQARRAGEV GLGLPSESLP RKVPPPPPQQ QPQQDQEREK  600
EPTSAGDVKH PAQEQEGEPE VQQRMQALKL PRRSSRQQQQ QQQHHHQQHQ QLLPLQPKQR  660
QLVSGKDDSL MLLLAAQPEL DEESAEELRR RIEKEEERLI DAMAMTDIPP SPSRNMQKGL  720
QKKVLELQRQ VQRLQEDKMR LLQHEEKLRP PPPPPKPRPE PPKPQEIILR SRTQRKSARG  780
VALATAAVAA ADLQEDEGGE EAVEEDEEEK KKQPARPPPQ LLLQRTKADE ERGRAGREKR  840
KSAKVKRRDA EGAEEEEEED DEEEERREEA EAAVDDDGEE WREEDYGAPR EEVPPPPQPP  900
LPVVNMSMFG RGPLGLTPSL GLPPVGDPAA YAGLLEGLGR SGALPDLPMV VLRPPDGGPP  960
VLCLAVPIST LSPGDVPMGA LPIGDLPRGS TLPPVGTLPL GGLPIGNIAA AAAAGWPPPQ  1020
QPLPPPGLPF GPAMAVAGLF GSGEDRPPQL QHGPHLARHG PVADGGGGAV TRARARGPGQ  1080
GQSQGQGFEA LAAAAAAAAA AGSSGPSNSR RPGDRPSGAA AATTRGNSGG AATDPSSSQG  1140
YGQGQGQAQG HERGTRAAPG SSQGTAATAK GDSAGGQGGD GPPGGRWAVA AAPANSGGGG  1200
GSAREGGRFA KGVPRGGGSF TGGRDVVSSK AMSSPEQAAA ILLAAAAGSG GGGGAGAGTG  1260
RFRKVPGAGA GGPSRGQAAP GGGGGQQWSG PQGSGPAAEA DGSENEEDPQ PAAADRRMAR  1320
LPPAAASASR EQRRGEASRA VPPGADADGG HVGVGEGTRG PGGARGGPGG GGAAAAGRAG  1380
DVGDDAGASS DEDYSDKSND VGPGPLPGPE DFMRMFPGGF GVPPRPPFLP GGGRGMAPFM  1440
APFMGPAFDR AAGGRPLGPD EYGVDAALNT ERAYANLLDA FPGAAPRRGG GGGGGGGGSL  1500
GAASGFGGLG PSGPGRAGAG VGGAAAASRR VAPPMLPQQM PAPALLGLQM QLLMTQMGQP  1560
GLMPPGLVPP GGPGARMPLQ QPRGGGGSGA SGHMPVPKHM PMHMPMPMHM QDHGVIPGGG  1620
GPRGRTGARP SGGPPQPQQP TGRGARRAGT RHYEDDEDSE SDE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	33	41	EKRRRRKRP
2	34	39	KRRRRK
3	34	40	KRRRRKR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002956184.1	0.0	hypothetical protein VOLCADRAFT_97174
TrEMBL	D8UC27	0.0	D8UC27_VOLCA; Uncharacterized protein
STRING	XP_002956184.1	0.0	(Volvox carteri)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	6e-07	myb domain protein 3r-5

Link Out ? help Back to Top
Phytozome	Vocar.0001s1620.2.p