PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vocar.0001s1661.1.p

Organism

Volvox carteri

Taxonomic ID

3067

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox

Family

MYB_related

Protein Properties

Length: 990aa MW: 96286.4 Da PI: 6.3527

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vocar.0001s1661.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	36.5	1.1e-11	61	103	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W+ E+ l+ ++qlG++ W++Ia+ ++ gRt++++k+ w++ Vocar.0001s1661.1.p 61 PWSLMEEATLAMRHAQLGNR-WAAIAKFLP-GRTENDVKNMWHST 103 8*****************.*****.*******99975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.06E-11	51	107	IPR009057	Homeodomain-like
PROSITE profile	PS51294	15.719	54	108	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.7E-15	54	107	IPR009057	Homeodomain-like
SMART	SM00717	1.4E-11	58	106	IPR001005	SANT/Myb domain
Pfam	PF00249	3.0E-10	60	102	IPR001005	SANT/Myb domain
CDD	cd00167	4.01E-9	61	104	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 990 aa Download sequence Send to blast
MDSPAIPENC EASGASSICV SDGMMPGGSL EWGPQNSRVR LKRTASSEAL DARQPSRSKA 60 PWSLMEEATL AMRHAQLGNR WAAIAKFLPG RTENDVKNMW HSTLRAKSCR RSSLLYTYTR 120 VVRDCCDDSQ ARKAAFEKAQ QLCTDSSPGQ ILPDANEAAG AATAPQQPVQ PPVQVHPPPA 180 PLPLPRGAVH TSSGIAVPLD AEQQALAAAA APSPWHAGTA VTILDPFSAD PSASFRTDYI 240 DTSSSSATGI WPREYNAASI ARVAAGVFTP GSGGVGGGTP LTRLGNAPGS GSALWLGVAG 300 DGSACISQPQ PQNHMLMRTV SVQPGRPLSY GVEQAAAAMP ALGGGCGGHG AVFTTVDVGV 360 AGTAAAAGDL TCINSTMSGN STTCVARLAQ LVLSVDAAAA PSLPHAQQQQ QLQQDFQLQS 420 QQQQQQAGCG ASVSGPGGGA GGLVGSGSFH GSAGTHPLSL DSGMAAGVVG SVTASGVECM 480 VPGYPSTLGG CGAGPLMSHG LGALSQLPCM MLRPVVHPGV AEQHAPPHVL AAGAAAAAAA 540 LGVGGVGAGG GVGHRGGGGG GLQPPMPLVR GPLRTSSDAA VLSAAWDRHT GGFGCGGGGG 600 GGAAAAVDSM LRFKLGLTAA DQAAAAAATT VAGGGGMRGG LLARVNGSSG DGGGSGGCFG 660 GLERQLGGGG SLSAPPSTVG PFLTTDGAFG TAVRHQMQLL RSPNFPAGTA GTAPALPEYP 720 HQEPQEALGA GGGGGGNTDL PSCVPPQPGA VQLENKPDRE MESEEAAGET GGGGGGGGGG 780 GNGNASEGAA EGSDVGANGI SSDPRDGASR CGGGSNGSKS QRDVLKLAAT VPDSGLTAIA 840 IGPQQKPSST TMSPAGAADG GGASAALDMH PLAYLPGGKG GKGEGGALLD GGAAAAAAAC 900 GSTAPAGFAT GAALALGALH QHGVVRHDVA AASLGAAAAA GMSSLQQPAV TDAVVVMGLG 960 DEDILACLSG MDPGARRSVL GYVSKKGTT*

Sequence ? help Back to Top

Protein Sequence Length: 990 aa Download sequence Send to blast

MDSPAIPENC EASGASSICV SDGMMPGGSL EWGPQNSRVR LKRTASSEAL DARQPSRSKA  60
PWSLMEEATL AMRHAQLGNR WAAIAKFLPG RTENDVKNMW HSTLRAKSCR RSSLLYTYTR  120
VVRDCCDDSQ ARKAAFEKAQ QLCTDSSPGQ ILPDANEAAG AATAPQQPVQ PPVQVHPPPA  180
PLPLPRGAVH TSSGIAVPLD AEQQALAAAA APSPWHAGTA VTILDPFSAD PSASFRTDYI  240
DTSSSSATGI WPREYNAASI ARVAAGVFTP GSGGVGGGTP LTRLGNAPGS GSALWLGVAG  300
DGSACISQPQ PQNHMLMRTV SVQPGRPLSY GVEQAAAAMP ALGGGCGGHG AVFTTVDVGV  360
AGTAAAAGDL TCINSTMSGN STTCVARLAQ LVLSVDAAAA PSLPHAQQQQ QLQQDFQLQS  420
QQQQQQAGCG ASVSGPGGGA GGLVGSGSFH GSAGTHPLSL DSGMAAGVVG SVTASGVECM  480
VPGYPSTLGG CGAGPLMSHG LGALSQLPCM MLRPVVHPGV AEQHAPPHVL AAGAAAAAAA  540
LGVGGVGAGG GVGHRGGGGG GLQPPMPLVR GPLRTSSDAA VLSAAWDRHT GGFGCGGGGG  600
GGAAAAVDSM LRFKLGLTAA DQAAAAAATT VAGGGGMRGG LLARVNGSSG DGGGSGGCFG  660
GLERQLGGGG SLSAPPSTVG PFLTTDGAFG TAVRHQMQLL RSPNFPAGTA GTAPALPEYP  720
HQEPQEALGA GGGGGGNTDL PSCVPPQPGA VQLENKPDRE MESEEAAGET GGGGGGGGGG  780
GNGNASEGAA EGSDVGANGI SSDPRDGASR CGGGSNGSKS QRDVLKLAAT VPDSGLTAIA  840
IGPQQKPSST TMSPAGAADG GGASAALDMH PLAYLPGGKG GKGEGGALLD GGAAAAAAAC  900
GSTAPAGFAT GAALALGALH QHGVVRHDVA AASLGAAAAA GMSSLQQPAV TDAVVVMGLG  960
DEDILACLSG MDPGARRSVL GYVSKKGTT*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002951845.1	0.0	hypothetical protein VOLCADRAFT_92418
TrEMBL	D8TZL9	0.0	D8TZL9_VOLCA; Uncharacterized protein
STRING	XP_002951845.1	0.0	(Volvox carteri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP9880	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74430.1	2e-13	myb domain protein 95

Link Out ? help Back to Top
Phytozome	Vocar.0001s1661.1.p