PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0001s1803.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family C3H
Protein Properties Length: 168aa    MW: 18241.8 Da    PI: 9.2805
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0001s1803.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.96.1e-123559227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                         kt+ C ++++ G C++G+rC+FaHg+
  Vocar.0001s1803.1.p 35 KTKVCTRWLQ-GDCRFGARCNFAHGE 59
                         89********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.0E-143265IPR000571Zinc finger, CCCH-type
SMARTSM003563.6E-63359IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.0143360IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.55E-83364IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-93559IPR000571Zinc finger, CCCH-type
SuperFamilySSF510454.45E-9125160IPR001202WW domain
PROSITE profilePS5002013.24126160IPR001202WW domain
SMARTSM004563.5E-10127160IPR001202WW domain
PfamPF003971.1E-11129158IPR001202WW domain
CDDcd002012.60E-8129160No hitNo description
Gene3DG3DSA:2.20.70.104.7E-8131161No hitNo description
PROSITE patternPS011590132158IPR001202WW domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MDGAFPSRRG EPFQYSGDGQ AAKPRGFKGT AENAKTKVCT RWLQGDCRFG ARCNFAHGEQ  60
ELRKLPERPG GRGGGRSGYN NYGTGRGGYG GRGQGGYQGG PGYEGVGYGQ PQTNADDVWA  120
AQGYPVQGPN GWVMYRTRDT GEPYYHNHRT NETTWDRPAD WQVGVPI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001703693.18e-59RNA binding protein
TrEMBLA0A2J8ADG48e-60A0A2J8ADG4_9CHLO; Zinc finger CCCH domain-containing protein 52
STRINGEDO963843e-58(Chlamydomonas reinhardtii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP569077
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.18e-10C3H family protein