PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vocar.0002s0236.1.p

Organism

Volvox carteri

Taxonomic ID

3067

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox

Family

ERF

Protein Properties

Length: 2230aa MW: 219890 Da PI: 7.831

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vocar.0002s0236.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	26.3	1.9e-08	1785	1833	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++ + grW+A+ ++ +g + ++lg ++t+ eAa+a ++a ++g Vocar.0002s0236.1.p 1785 SRYTGVYRTP-GGRWRAQ---FCYRG--AVHQLGMYDTEREAAAAWDQAVVTFRG 1833 78***999.9**...97765..******99***9999877665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	8.1E-5	1785	1827	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	3.2E-9	1785	1835	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	2.5E-7	1786	1843	IPR001471	AP2/ERF domain
SMART	SM00380	6.1E-4	1786	1849	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	12.892	1786	1843	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 2230 aa Download sequence Send to blast
PCTGLLHYVH AFLLAACKLG AAQDRGSPYD SPREEVNNCN NKPSTAKKFR NASPQRAHLV 60 GANSFGIYTK GIGPTETARE PKDRSKARRS ELNRAGVDQC PCKRATSKTS LRTPSDGRTV 120 THASGQRHEG TVTSAIASLP TRDHASMLQQ LATQMQSQQH LLGNASPYVW EQQPRPAELG 180 GSLAVVSSSV SQRPFSVFPV EPSIDRNAPY FSQGSGSTTL QSGWADSRVL PHPFASSNSS 240 SLQVSLELPP GQFTSPGTLP LHSPATSAPM TATSAVPQPQ PQPETLAAVP GVRGVSCVIV 300 DGQPSLGLSP PAAGGGRGAS ASGAALPLLP QPPLGSGGVL QLAAPAAGAA AATGPTAAAT 360 ATVQGSSAPA ELTAPTCASL PALCLPAVAS DVCGLAPVPS GASGGGGSGG RVGIDSHHAT 420 GQPAAAGGGA AVVAAGVAMP PQQQHPNPAP PQHSGGLSLR RIKPVAAAID LHCALAARKE 480 QHPVPPPPPH PQPQQQPLLQ SPSSAICDAS TSGRPGPYVP QCGLAGGSSV LPIAPAVEGV 540 PSAAAAGPAH SGSADGAPAA SARAAVAVGL SAGVDGMKGM NAAHSTMQQL PPQQADGGSN 600 ETAGEGQVLW APTAAVNTTA DTAPWAGVVS SGHMGPYPGG RADAVGASGS GGGGTATTFT 660 IGCNLLQQGT GTTTALPCTY GSQARASGGG GGPDAGGGGG GGLVPTDCVG PPAGAPILSG 720 RASDPGVSSF PQQQQQQQVV LLPPGESASA SPAVKSSAHK AIAAIPVSLQ QQQQQQQLAG 780 GSTSGGAIAD RFLASLVLPG VGGLTPPTEP ASGGFSLPAE AAQEPPHPQL QPQHLPQPVA 840 AAAAAPQPQP LLFPPSLGIP PFSPAALQLM AFSQMGQAVA ATAEHQQHHQ ALQSDQQQQQ 900 QQQLAQLQQH HQAAAALSLM QHMWQAPFGL VMPPGMMGMG MVPGMIWPPG QMGLTPAAMP 960 TPGGPLNPAA AAAAAAAAAA QFPALFNPAM MLPALAPFAL PLQAAATAAA AQQLQQQQQQ 1020 QQQQPAATVA AVNAAISGRS TAGNAGMTAA AAAVPPALVK GSSRPTKSAV KTEAAASVRG 1080 ASATQEPAVQ KQQQPQQPGG TTSCVGPEAA VRAPPTRCLT PLVPSALPSA AAATTAAAAA 1140 AHPLVVQQVR PDFTAFAGAP AFSAAEADSR PGPPPQTEAD DGGGVLAAPA AANCRRGNTA 1200 AGAATRDGAS GDGNKDNSAV GAADADAEAE VEVAKKAPRS LPGLEVTRLQ SFASADLVVV 1260 DALQLLAASP PPSPHRERRA SGTSGASVTT AGGGGGSRRS SDGGGAAGAA AGIGPTATAD 1320 ADTTTSGRPH TVPARRMFEL PDPVPVKREP PQPQSGAAGL TSAAGQGPRA AVTSAGEVRG 1380 PAATIPASAR LPWLATSPAL PLPPRAAAAA AGTLDRQRLL HLAAVGAEKV RRRASGQGGS 1440 GASLVGLEAA ATGVADGRED EPQLALPPGA RRPKTRLARA AAAPGGAFLA VILEATEAAA 1500 AASAADAEIG GDGEEMETHA GAVATAQGLG LGHSRAPVVA GSQPLSAAAV AAIGAGRSAR 1560 RSTGSGGGGG TRKVQWATSE EAPFGSMRSA ATAGAEEDEG MVQGGEEEDV GEEDGEELEE 1620 VAAARGVRQR SRRWRHPAAA AAGSDGGGGG EGDEDDSDED YNLGREARRR ARGARRGGGG 1680 AGGATASVFA AARRAARGGG GGGSGGSAVD SDDGEGGLTS DDPAHGYTGD GDDDTATAEG 1740 AAAAAAAARR RRSGHGRPPG AGNLRKMKPR RLQSDGRLGF AMRSSRYTGV YRTPGGRWRA 1800 QFCYRGAVHQ LGMYDTEREA AAAWDQAVVT FRGSSSGVQL NLPQLLNSYD LQNVREHIHR 1860 ILDSKIATTR TKRCLNSYAR NPPGPKSPSR VVPAAVIENI TTEPGTEDGG DVQLYDGGGD 1920 AAASGHVDLS GLPAAAAAAA AGGGGGGVGE VGSSQGRVRT ATAAAGRACR RRRSPSPSGD 1980 GGPDDSGGDG ASGSTAGGCR AARKRAHHDV GGGGGGGGAV LGNSSGGLQP HTAAQDNTAG 2040 GQQLLLQAQP QRLGALPVGD AALLGLAALR RHLPLPPPPS VAAGAAADTA SLPPPPLRSH 2100 DLAGGDVTAA ATTDIAATAA AVATDAAVAA ASAAAAVDDV LPPSKRSSET TTTADAAAAA 2160 AAAAASLVQP STHEPWDVEG PAVSKVAAEA QHRSSSSGGG EGGDATGARS GRAASPKRRK 2220 SLAIRSRDY*

Sequence ? help Back to Top

Protein Sequence Length: 2230 aa Download sequence Send to blast

PCTGLLHYVH AFLLAACKLG AAQDRGSPYD SPREEVNNCN NKPSTAKKFR NASPQRAHLV  60
GANSFGIYTK GIGPTETARE PKDRSKARRS ELNRAGVDQC PCKRATSKTS LRTPSDGRTV  120
THASGQRHEG TVTSAIASLP TRDHASMLQQ LATQMQSQQH LLGNASPYVW EQQPRPAELG  180
GSLAVVSSSV SQRPFSVFPV EPSIDRNAPY FSQGSGSTTL QSGWADSRVL PHPFASSNSS  240
SLQVSLELPP GQFTSPGTLP LHSPATSAPM TATSAVPQPQ PQPETLAAVP GVRGVSCVIV  300
DGQPSLGLSP PAAGGGRGAS ASGAALPLLP QPPLGSGGVL QLAAPAAGAA AATGPTAAAT  360
ATVQGSSAPA ELTAPTCASL PALCLPAVAS DVCGLAPVPS GASGGGGSGG RVGIDSHHAT  420
GQPAAAGGGA AVVAAGVAMP PQQQHPNPAP PQHSGGLSLR RIKPVAAAID LHCALAARKE  480
QHPVPPPPPH PQPQQQPLLQ SPSSAICDAS TSGRPGPYVP QCGLAGGSSV LPIAPAVEGV  540
PSAAAAGPAH SGSADGAPAA SARAAVAVGL SAGVDGMKGM NAAHSTMQQL PPQQADGGSN  600
ETAGEGQVLW APTAAVNTTA DTAPWAGVVS SGHMGPYPGG RADAVGASGS GGGGTATTFT  660
IGCNLLQQGT GTTTALPCTY GSQARASGGG GGPDAGGGGG GGLVPTDCVG PPAGAPILSG  720
RASDPGVSSF PQQQQQQQVV LLPPGESASA SPAVKSSAHK AIAAIPVSLQ QQQQQQQLAG  780
GSTSGGAIAD RFLASLVLPG VGGLTPPTEP ASGGFSLPAE AAQEPPHPQL QPQHLPQPVA  840
AAAAAPQPQP LLFPPSLGIP PFSPAALQLM AFSQMGQAVA ATAEHQQHHQ ALQSDQQQQQ  900
QQQLAQLQQH HQAAAALSLM QHMWQAPFGL VMPPGMMGMG MVPGMIWPPG QMGLTPAAMP  960
TPGGPLNPAA AAAAAAAAAA QFPALFNPAM MLPALAPFAL PLQAAATAAA AQQLQQQQQQ  1020
QQQQPAATVA AVNAAISGRS TAGNAGMTAA AAAVPPALVK GSSRPTKSAV KTEAAASVRG  1080
ASATQEPAVQ KQQQPQQPGG TTSCVGPEAA VRAPPTRCLT PLVPSALPSA AAATTAAAAA  1140
AHPLVVQQVR PDFTAFAGAP AFSAAEADSR PGPPPQTEAD DGGGVLAAPA AANCRRGNTA  1200
AGAATRDGAS GDGNKDNSAV GAADADAEAE VEVAKKAPRS LPGLEVTRLQ SFASADLVVV  1260
DALQLLAASP PPSPHRERRA SGTSGASVTT AGGGGGSRRS SDGGGAAGAA AGIGPTATAD  1320
ADTTTSGRPH TVPARRMFEL PDPVPVKREP PQPQSGAAGL TSAAGQGPRA AVTSAGEVRG  1380
PAATIPASAR LPWLATSPAL PLPPRAAAAA AGTLDRQRLL HLAAVGAEKV RRRASGQGGS  1440
GASLVGLEAA ATGVADGRED EPQLALPPGA RRPKTRLARA AAAPGGAFLA VILEATEAAA  1500
AASAADAEIG GDGEEMETHA GAVATAQGLG LGHSRAPVVA GSQPLSAAAV AAIGAGRSAR  1560
RSTGSGGGGG TRKVQWATSE EAPFGSMRSA ATAGAEEDEG MVQGGEEEDV GEEDGEELEE  1620
VAAARGVRQR SRRWRHPAAA AAGSDGGGGG EGDEDDSDED YNLGREARRR ARGARRGGGG  1680
AGGATASVFA AARRAARGGG GGGSGGSAVD SDDGEGGLTS DDPAHGYTGD GDDDTATAEG  1740
AAAAAAAARR RRSGHGRPPG AGNLRKMKPR RLQSDGRLGF AMRSSRYTGV YRTPGGRWRA  1800
QFCYRGAVHQ LGMYDTEREA AAAWDQAVVT FRGSSSGVQL NLPQLLNSYD LQNVREHIHR  1860
ILDSKIATTR TKRCLNSYAR NPPGPKSPSR VVPAAVIENI TTEPGTEDGG DVQLYDGGGD  1920
AAASGHVDLS GLPAAAAAAA AGGGGGGVGE VGSSQGRVRT ATAAAGRACR RRRSPSPSGD  1980
GGPDDSGGDG ASGSTAGGCR AARKRAHHDV GGGGGGGGAV LGNSSGGLQP HTAAQDNTAG  2040
GQQLLLQAQP QRLGALPVGD AALLGLAALR RHLPLPPPPS VAAGAAADTA SLPPPPLRSH  2100
DLAGGDVTAA ATTDIAATAA AVATDAAVAA ASAAAAVDDV LPPSKRSSET TTTADAAAAA  2160
AAAAASLVQP STHEPWDVEG PAVSKVAAEA QHRSSSSGGG EGGDATGARS GRAASPKRRK  2220
SLAIRSRDY*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002946268.1	0.0	hypothetical protein VOLCADRAFT_120236
TrEMBL	D8TIL0	0.0	D8TIL0_VOLCA; Uncharacterized protein
STRING	XP_002946268.1	0.0	(Volvox carteri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP9751	4	4

Link Out ? help Back to Top
Phytozome	Vocar.0002s0236.1.p