PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vocar.0002s0401.1.p

Organism

Volvox carteri

Taxonomic ID

3067

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox

Family

MYB_related

Protein Properties

Length: 1329aa MW: 128711 Da PI: 7.2789

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vocar.0002s0401.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45	2.4e-14	56	100	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT eE+ ++++a k++G W++I +++ ++t+ q++s+ qk+ Vocar.0002s0401.1.p 56 REKWTDEEHAKFLEALKLYGRA-WRKIEEHVS-TKTAVQIRSHAQKF 100 789***************88.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	21.248	51	105	IPR017930	Myb domain
SuperFamily	SSF46689	7.1E-15	51	106	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.2E-14	54	103	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	3.2E-9	54	103	IPR009057	Homeodomain-like
SMART	SM00717	2.5E-12	55	103	IPR001005	SANT/Myb domain
Pfam	PF00249	9.5E-12	56	99	IPR001005	SANT/Myb domain
CDD	cd00167	9.56E-9	58	101	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1329 aa Download sequence Send to blast
MEEANGPKPG LQALQPMQSQ QLGGPPSAPS TSGQQPQDHE APKPKARKPY IITKQREKWT 60 DEEHAKFLEA LKLYGRAWRK IEEHVSTKTA VQIRSHAQKF INKLERNPPA EDGEGIAISI 120 PPPRPKRKPS RPYPRKESAL PENSGSAAAD ASGVNGGGTT TVTTLGGGGG GGATGGGGGG 180 GSTAVAGNCQ QQSKLSVPAP PPRSAQQLLT LPPPIAGLQH LHLAFQAAQP LTPVAAAAVA 240 AAAVKSQHQQ QQQHQLLQDR QQSAHHAEVT DATVAAVAAA ASAAAAAAAA AVVAAAGQQV 300 QAHLQSHPPQ GFPFFGLPPS LLAQITLQNP ALETIPWGGA VSNGNGTGTA NGSVVGGIAP 360 PHRGGGGGGG GGASHTGTEG CLEEHAWSGP RDAPPWMISP AAAAAAAAAA ADRGRHHHHP 420 THHHHHHHHH HHHRHHSSER SQQQQTLALA EATATTNDGE NPTAMMMLAG ELLALGRGVG 480 GGGQESRGNS DGNSVVTERD GEPGAGDDDD EDEGDDEGGD DGGGEGEGEG EDVGGGGREQ 540 AAQSNLLGTD PVGAQWLSAV PQPADLDQQQ ENNPTLQYWQ MLGMMDGNRA LLAAVAGGPG 600 GGGSGNGSGG LGVPSRDGHV HGLGLGLGLG LGHGGHVHGV MKKSLSNSTR TTGSGGGGLR 660 AKTSAKTHGS LKEAQGAAFL RDQHKKVVAA RGASPCGSDM SGMRDHHHHH HHHHHLAHNH 720 NHNHNMEPTS PSLQEAGSGG GGGGGGGKAA GRGGGGGGGG GGGSSDTNGS DSRLRAACHN 780 HEIREAQGSN PTNTNNGNNG NGNGSSGNGS NGNGNGSGSQ GNGSQGNVNG SSGNGNGSSG 840 NGNGSSGNGN SGGSGGGGNG DNGNGHSVKD SNTLVFNGNG HSSANGTSQH HSHHHHHHHG 900 HLPRSPAYDI GRYPSRWDVR DRDGNGASGS GVRRPSSEEG GEDHDGGGAA GQAVGTPMGA 960 VGGGGGSGSG DGGGDAGAAG GGGGPGQAGR TGGGSGGSAV PTGSDAAGCG ASARKGPRGG 1020 SGAGGRGESG IDASAGGSGS DGSGGKGNGG AGSGGAGSGR TDGGSVGGGG MAGLIGCPGG 1080 GGGGGGGGST PRRPDGATGI ALGRAGSAFT VPPPSVRSRG GSSGPAAGSG GCGSSGAAAA 1140 AADVGKMQTL LARLQVHASL APYQTPPAGL SPTFTQRAMN TTTTTAAKPF YSATTHPGLL 1200 GAMAQAAAVA AAAQSTPPPP PPAATTAASL AAAAASKLVL PGAAADALAA ALSQIAHGTF 1260 PPLSSDGPEL PPVAPLDPAG RLTAAAASAA PASAAAAAPA AASPLPEVAA EPAAAPSHPP 1320 TRRRPTPG*

Sequence ? help Back to Top

Protein Sequence Length: 1329 aa Download sequence Send to blast

MEEANGPKPG LQALQPMQSQ QLGGPPSAPS TSGQQPQDHE APKPKARKPY IITKQREKWT  60
DEEHAKFLEA LKLYGRAWRK IEEHVSTKTA VQIRSHAQKF INKLERNPPA EDGEGIAISI  120
PPPRPKRKPS RPYPRKESAL PENSGSAAAD ASGVNGGGTT TVTTLGGGGG GGATGGGGGG  180
GSTAVAGNCQ QQSKLSVPAP PPRSAQQLLT LPPPIAGLQH LHLAFQAAQP LTPVAAAAVA  240
AAAVKSQHQQ QQQHQLLQDR QQSAHHAEVT DATVAAVAAA ASAAAAAAAA AVVAAAGQQV  300
QAHLQSHPPQ GFPFFGLPPS LLAQITLQNP ALETIPWGGA VSNGNGTGTA NGSVVGGIAP  360
PHRGGGGGGG GGASHTGTEG CLEEHAWSGP RDAPPWMISP AAAAAAAAAA ADRGRHHHHP  420
THHHHHHHHH HHHRHHSSER SQQQQTLALA EATATTNDGE NPTAMMMLAG ELLALGRGVG  480
GGGQESRGNS DGNSVVTERD GEPGAGDDDD EDEGDDEGGD DGGGEGEGEG EDVGGGGREQ  540
AAQSNLLGTD PVGAQWLSAV PQPADLDQQQ ENNPTLQYWQ MLGMMDGNRA LLAAVAGGPG  600
GGGSGNGSGG LGVPSRDGHV HGLGLGLGLG LGHGGHVHGV MKKSLSNSTR TTGSGGGGLR  660
AKTSAKTHGS LKEAQGAAFL RDQHKKVVAA RGASPCGSDM SGMRDHHHHH HHHHHLAHNH  720
NHNHNMEPTS PSLQEAGSGG GGGGGGGKAA GRGGGGGGGG GGGSSDTNGS DSRLRAACHN  780
HEIREAQGSN PTNTNNGNNG NGNGSSGNGS NGNGNGSGSQ GNGSQGNVNG SSGNGNGSSG  840
NGNGSSGNGN SGGSGGGGNG DNGNGHSVKD SNTLVFNGNG HSSANGTSQH HSHHHHHHHG  900
HLPRSPAYDI GRYPSRWDVR DRDGNGASGS GVRRPSSEEG GEDHDGGGAA GQAVGTPMGA  960
VGGGGGSGSG DGGGDAGAAG GGGGPGQAGR TGGGSGGSAV PTGSDAAGCG ASARKGPRGG  1020
SGAGGRGESG IDASAGGSGS DGSGGKGNGG AGSGGAGSGR TDGGSVGGGG MAGLIGCPGG  1080
GGGGGGGGST PRRPDGATGI ALGRAGSAFT VPPPSVRSRG GSSGPAAGSG GCGSSGAAAA  1140
AADVGKMQTL LARLQVHASL APYQTPPAGL SPTFTQRAMN TTTTTAAKPF YSATTHPGLL  1200
GAMAQAAAVA AAAQSTPPPP PPAATTAASL AAAAASKLVL PGAAADALAA ALSQIAHGTF  1260
PPLSSDGPEL PPVAPLDPAG RLTAAAASAA PASAAAAAPA AASPLPEVAA EPAAAPSHPP  1320
TRRRPTPG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP454	14	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	2e-30	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Vocar.0002s0401.1.p