PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vocar.0002s0401.2.p

Organism

Volvox carteri

Taxonomic ID

3067

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox

Family

MYB_related

Protein Properties

Length: 1325aa MW: 128356 Da PI: 7.2789

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vocar.0002s0401.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45	2.4e-14	56	100	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT eE+ ++++a k++G W++I +++ ++t+ q++s+ qk+ Vocar.0002s0401.2.p 56 REKWTDEEHAKFLEALKLYGRA-WRKIEEHVS-TKTAVQIRSHAQKF 100 789***************88.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	21.248	51	105	IPR017930	Myb domain
SuperFamily	SSF46689	7.03E-15	51	106	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.2E-14	54	103	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	3.2E-9	54	103	IPR009057	Homeodomain-like
SMART	SM00717	2.5E-12	55	103	IPR001005	SANT/Myb domain
Pfam	PF00249	9.5E-12	56	99	IPR001005	SANT/Myb domain
CDD	cd00167	9.53E-9	58	101	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1325 aa Download sequence Send to blast
MEEANGPKPG LQALQPMQSQ QLGGPPSAPS TSGQQPQDHE APKPKARKPY IITKQREKWT 60 DEEHAKFLEA LKLYGRAWRK IEEHVSTKTA VQIRSHAQKF INKLERNPPA EDGEGIAISI 120 PPPRPKRKPS RPYPRKESAL PENSGSAAAD ASGVNGGGTT TVTTLGGGGG GGATGGGGGG 180 GSTAVAGNCQ QQSKLSVPAP PPRSAQQLLT LPPPIAGLQH LHLAFQAAQP LTPVAAAAVA 240 AAAVKSQHQQ QQQHQLLQDR QQSAHHAEVT DATVAAVAAA ASAAAAAAAA AVVAAAGQQV 300 QAHLQSHPPQ GFPFFGLPPS LLAQITLQNP ALETIPWGGA VSNGNGTGTA NGSVVGGIAP 360 PHRGGGGGGG GGASHTGTEG CLEEHAWSGP RDAPPWMISP AAAAAAAAAA ADRGRHHHHP 420 THHHHHHHHH HHHRHHSSER SQQQQTLALA EATATTNDGE NPTAMMMLAG ELLALGRGVG 480 GGGQESRGNS DGNSVVTERD GEPGAGDDDD EDEGDDEGGD DGGGEGEGEG EDVGGGGREQ 540 AAQSNLLGTD PWLSAVPQPA DLDQQQENNP TLQYWQMLGM MDGNRALLAA VAGGPGGGGS 600 GNGSGGLGVP SRDGHVHGLG LGLGLGLGHG GHVHGVMKKS LSNSTRTTGS GGGGLRAKTS 660 AKTHGSLKEA QGAAFLRDQH KKVVAARGAS PCGSDMSGMR DHHHHHHHHH HLAHNHNHNH 720 NMEPTSPSLQ EAGSGGGGGG GGGKAAGRGG GGGGGGGGGS SDTNGSDSRL RAACHNHEIR 780 EAQGSNPTNT NNGNNGNGNG SSGNGSNGNG NGSGSQGNGS QGNVNGSSGN GNGSSGNGNG 840 SSGNGNSGGS GGGGNGDNGN GHSVKDSNTL VFNGNGHSSA NGTSQHHSHH HHHHHGHLPR 900 SPAYDIGRYP SRWDVRDRDG NGASGSGVRR PSSEEGGEDH DGGGAAGQAV GTPMGAVGGG 960 GGSGSGDGGG DAGAAGGGGG PGQAGRTGGG SGGSAVPTGS DAAGCGASAR KGPRGGSGAG 1020 GRGESGIDAS AGGSGSDGSG GKGNGGAGSG GAGSGRTDGG SVGGGGMAGL IGCPGGGGGG 1080 GGGGSTPRRP DGATGIALGR AGSAFTVPPP SVRSRGGSSG PAAGSGGCGS SGAAAAAADV 1140 GKMQTLLARL QVHASLAPYQ TPPAGLSPTF TQRAMNTTTT TAAKPFYSAT THPGLLGAMA 1200 QAAAVAAAAQ STPPPPPPAA TTAASLAAAA ASKLVLPGAA ADALAAALSQ IAHGTFPPLS 1260 SDGPELPPVA PLDPAGRLTA AAASAAPASA AAAAPAAASP LPEVAAEPAA APSHPPTRRR 1320 PTPG*

Sequence ? help Back to Top

Protein Sequence Length: 1325 aa Download sequence Send to blast

MEEANGPKPG LQALQPMQSQ QLGGPPSAPS TSGQQPQDHE APKPKARKPY IITKQREKWT  60
DEEHAKFLEA LKLYGRAWRK IEEHVSTKTA VQIRSHAQKF INKLERNPPA EDGEGIAISI  120
PPPRPKRKPS RPYPRKESAL PENSGSAAAD ASGVNGGGTT TVTTLGGGGG GGATGGGGGG  180
GSTAVAGNCQ QQSKLSVPAP PPRSAQQLLT LPPPIAGLQH LHLAFQAAQP LTPVAAAAVA  240
AAAVKSQHQQ QQQHQLLQDR QQSAHHAEVT DATVAAVAAA ASAAAAAAAA AVVAAAGQQV  300
QAHLQSHPPQ GFPFFGLPPS LLAQITLQNP ALETIPWGGA VSNGNGTGTA NGSVVGGIAP  360
PHRGGGGGGG GGASHTGTEG CLEEHAWSGP RDAPPWMISP AAAAAAAAAA ADRGRHHHHP  420
THHHHHHHHH HHHRHHSSER SQQQQTLALA EATATTNDGE NPTAMMMLAG ELLALGRGVG  480
GGGQESRGNS DGNSVVTERD GEPGAGDDDD EDEGDDEGGD DGGGEGEGEG EDVGGGGREQ  540
AAQSNLLGTD PWLSAVPQPA DLDQQQENNP TLQYWQMLGM MDGNRALLAA VAGGPGGGGS  600
GNGSGGLGVP SRDGHVHGLG LGLGLGLGHG GHVHGVMKKS LSNSTRTTGS GGGGLRAKTS  660
AKTHGSLKEA QGAAFLRDQH KKVVAARGAS PCGSDMSGMR DHHHHHHHHH HLAHNHNHNH  720
NMEPTSPSLQ EAGSGGGGGG GGGKAAGRGG GGGGGGGGGS SDTNGSDSRL RAACHNHEIR  780
EAQGSNPTNT NNGNNGNGNG SSGNGSNGNG NGSGSQGNGS QGNVNGSSGN GNGSSGNGNG  840
SSGNGNSGGS GGGGNGDNGN GHSVKDSNTL VFNGNGHSSA NGTSQHHSHH HHHHHGHLPR  900
SPAYDIGRYP SRWDVRDRDG NGASGSGVRR PSSEEGGEDH DGGGAAGQAV GTPMGAVGGG  960
GGSGSGDGGG DAGAAGGGGG PGQAGRTGGG SGGSAVPTGS DAAGCGASAR KGPRGGSGAG  1020
GRGESGIDAS AGGSGSDGSG GKGNGGAGSG GAGSGRTDGG SVGGGGMAGL IGCPGGGGGG  1080
GGGGSTPRRP DGATGIALGR AGSAFTVPPP SVRSRGGSSG PAAGSGGCGS SGAAAAAADV  1140
GKMQTLLARL QVHASLAPYQ TPPAGLSPTF TQRAMNTTTT TAAKPFYSAT THPGLLGAMA  1200
QAAAVAAAAQ STPPPPPPAA TTAASLAAAA ASKLVLPGAA ADALAAALSQ IAHGTFPPLS  1260
SDGPELPPVA PLDPAGRLTA AAASAAPASA AAAAPAAASP LPEVAAEPAA APSHPPTRRR  1320
PTPG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	3e-30	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Vocar.0002s0401.2.p