PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0002s0488.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family MYB
Protein Properties Length: 740aa    MW: 75518.9 Da    PI: 5.3852
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0002s0488.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.43.4e-181964147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         +g+WT+eEde l  +v  +G ++W++Ia++++ gR++k+c++rw++ 
  Vocar.0002s0488.1.p 19 KGPWTPEEDEVLRGLVVTHGARNWTKIAECIP-GRSGKSCRLRWLNQ 64
                         79******************************.***********996 PP
2Myb_DNA-binding50.83.9e-1672113245
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          g++T+eEd  ++ a+ q+G++ W++I+++++ gRt++++k+rw+
  Vocar.0002s0488.1.p  72 GPFTPEEDAVILWAHLQYGNK-WASISKHLP-GRTDNHIKNRWN 113
                          89*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.6741465IPR017930Myb domain
SuperFamilySSF466891.08E-3018112IPR009057Homeodomain-like
SMARTSM007171.1E-151867IPR001005SANT/Myb domain
PfamPF002493.6E-171964IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-252072IPR009057Homeodomain-like
CDDcd001672.72E-142163No hitNo description
PROSITE profilePS5129423.64766120IPR017930Myb domain
SMARTSM007179.9E-1370118IPR001005SANT/Myb domain
PfamPF002491.6E-1372113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-2273119IPR009057Homeodomain-like
CDDcd001671.57E-973116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 740 aa     Download sequence    Send to blast
MAFYSGQDVG DLGGEDNSKG PWTPEEDEVL RGLVVTHGAR NWTKIAECIP GRSGKSCRLR  60
WLNQLSPHVR GGPFTPEEDA VILWAHLQYG NKWASISKHL PGRTDNHIKN RWNCTLKKRY  120
GTMLETLRLE AAPGSVSLMD ISNLMAQNLP AGSRVPLGAG VGGGMQLPRW LPGPGPAGLG  180
AAGAAAFGPA AAQLLAATGP GPLAGLVPGT QLPIGSMGPL AMAMAGALGA AGSTTPGAAA  240
AGAALPPGIQ AGPGIQPAQR LALAAGPAGE MSPRKRAFMA AAAAAAAAAA DLEQKDDARG  300
TKRAWDDEGR DASEEGGSDD GEDSAAMALK QLAMPRGRDP PRPGSGAGAG NTEGGARSGD  360
RDAEGNGGDD AGEGQDDDED DDDGSDIEMG GGRRGRGRAR GSQSRKAARG GRGGGGGGGG  420
GLLGLPGTLP IPGALQVNGR TPSNGSRPAG AGAPGSSVPL PLGSTKMELA APPPLQLQLQ  480
PYPPAGQRVS SGSDGAAAEG SGGGATAATA ATVGGIPSAP AGSSSQAQSG AAAAAAAAAA  540
GVSQLNGYGS VLLTLPENLM QLSSTLRVVL TTGNIAAAQA LVSKLEELAY TVLMQRAAYN  600
LLNCNPFEAA DPESQKSQQQ QVQQQQQQPQ PPPQQQQQLS LQQQQQLLQQ VQQQQLQQQQ  660
QQQQLQQQVQ QQLQQQVQQQ LLQQQQQQQQ QQQQQQQQQQ QQQQQQQQQA AALSTIVGSG  720
AVDAQMLAQI LLLSQGALS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-32131221110B-MYB
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1409417GGRGGGGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1516114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.13e-42myb domain protein r1