PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vocar.0002s0544.1.p

Organism

Volvox carteri

Taxonomic ID

3067

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox

Family

MYB

Protein Properties

Length: 3381aa MW: 341262 Da PI: 7.2942

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vocar.0002s0544.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.1	1.7e-07	1723	1764	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +W +eE l+ d + q++++ +++I+ +++ gR++ +c+ +++k Vocar.0002s0544.1.p 1723 SWAEEERTLFMDKFLQHPKD-FRKISTYLP-GRSPGDCVAFFYK 1764 7***************99.*****.********998 PP
2	Myb_DNA-binding	27.4	7.9e-09	2484	2527	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 W+ +E + ++++++++G + W + a ++ +++ +q+k ++++y+ Vocar.0002s0544.1.p 2484 YWSDDERKTFLQVFQMHGRD-WLRLADAIP-TKSTNQIKTFYHNYK 2527 5***************77.*****.***********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.05E-11	1707	1769	IPR009057	Homeodomain-like
PROSITE profile	PS51293	14.057	1719	1770	IPR017884	SANT domain
SMART	SM00717	1.2E-5	1720	1768	IPR001005	SANT/Myb domain
Pfam	PF00249	1.3E-5	1723	1764	IPR001005	SANT/Myb domain
PROSITE profile	PS51293	7.051	1939	1987	IPR017884	SANT domain
SMART	SM00717	7.3	1940	1985	IPR001005	SANT/Myb domain
CDD	cd00167	0.00306	1944	1983	No hit	No description
SuperFamily	SSF46689	1.72E-11	2478	2531	IPR009057	Homeodomain-like
PROSITE profile	PS51293	11.808	2480	2531	IPR017884	SANT domain
SMART	SM00717	1.8E-8	2481	2529	IPR001005	SANT/Myb domain
Pfam	PF00249	2.2E-8	2484	2527	IPR001005	SANT/Myb domain
CDD	cd00167	2.36E-6	2485	2527	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.3E-6	2485	2527	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 3381 aa Download sequence Send to blast
MEDNREAYRR GLGHGRLHSY EGPVSPRDQF YGGPLRENRE VFRRPSYGFT SPLGRAGNYN 60 GPTGPVSPDC DRPRGYSPDR RPYSPEHDRR AYSPERPDRD RGPRYQIQER TNGYRPREEG 120 FRREAYGYRG EDSRPPARSR DPSPDHHHSH YHSGREQLQP LRDRGPDMDL HPRAASREGT 180 PLDSWSMERG GKLPLMPSVP SHGHGSSRGG GHRGGSNSSG SLRGAGAEYQ ENGPSNGDLE 240 AGEVAPGPGS RGDHARPSPD QHHSHHHAPH HHHHSSYHGP HSHHHGPGAG PGTGSGPVSS 300 SHLSHHGTHR SASSALLSPR GGGPSGGWEP KSGHLSAGIG SGPGLGQSGG HREGPPPPRE 360 GGREVTGRDT ARDAGARDPR DAGKIGYRSA SLPSGVQQQS TRDGQGRLEG GLARDGSFSG 420 RDRDRDRERD RDRDRERDRE RDKGTTATVS FSHAARSSSQ GVPAPSPGQS PRRTGSDMAT 480 GQGAGAGGSG EVQQAPPVVP DRGREGIISV VELPQQQHQQ AQQQLRWGSG TSSAIQHQQQ 540 PSSSPQQQQQ QTGLGRCVSS GTAAPSASAG GASEAMAAAG VVGGAAAGPS PGATMEVERR 600 ASNTSMELDR RYSSGTAPGS GRLDRKPSGS SSQGQAPGLD AVTQLARVST AGTAPFPLDR 660 PTAAAVTPSP AARAPASAPA AASTQPPTSP VDVKGAESAD RRPNRSSKPA HAGASCASAA 720 AAAPSLAVAA VPPSASPSAV VMAPPSAVAV APSESRPSST AGAGSDGGAG AAPGIPAVAS 780 VNSLSTADTQ AGAPVATGRA ASVSAPEAEP GELPGDGQTQ AARAPSLQPM GPTASPSAQA 840 PSAAPSQPLA TVCGPRVPAS IATQPQAVQV PSPPSAAAAQ PPLHPTQQEP VQQQRPAEES 900 VPSTTPVSGV IAGAAGAVDA VTGPSSSASE APFARLSCSG GQTSEHPPAA TLSTMPGPRG 960 LGGSTAQPAP HGSGAAAGAG EDALLPEKRS SLSIRRFGFG RARRSMPAKS AGEGGAPEDG 1020 EVPGGAVSLE RAPSGAGRPQ PPGEVVDPEV PGTILAAGTA GGKESYAALP PSLVVPEPAG 1080 APPTAAAGVA AAVSTPMSVP GMTTGGFLPT PIPAALTPGG ACMPHVGGFT PHYGTATSYS 1140 QLTSPVAGPM ATPSAAAATT PAATAAATMS IGVALATRSS SSAPSGSGAG AAATGNCAPM 1200 EVDSHNAAAS QDVVHKMQQQ QQPQQSSADA AGSSRNPAET LAGLSLRIEH LETEITDLER 1260 QLAALASESR QAQIDAAELA AEVGALEEQL LEDSSSDGGD SDENISGAPG ESKSSQPVAE 1320 GDADANGVDR SGGSASSANG ECGREGLATA APVMTAQTPV QEVPGSHHQA ATTTADGNSA 1380 GIQPAQGDGD GATQMDTEAE GLTEAAEDDG DDAAMSTKSQ DADEAAAAAS SIKPRGRPRS 1440 TAKMRAAEAA AAAAAAADSR RKALELQSRN PADGLLHLPA QHFKPRYMDA TRRGVSAAQE 1500 EVLRLLPDSL AARVRSVVEA ATAQQARLAS TAPAPGHGRW AVLVPLVPVQ VEPLYQEPQD 1560 IPAFHANNQR HAAIRDAVGR YLRQRRQLVA AKHSVLVEQY ARNMATYKQY IQTEGRRPPA 1620 PPPPLSTTGR GASGAPSYGM YGASRAVSSY NPYSYSHSDV IRSDLDEHRL LNNFLAVEQL 1680 KRMCALPDMV LDPWERRWRA YDNRNGLVQD PVRELEEERM IKSWAEEERT LFMDKFLQHP 1740 KDFRKISTYL PGRSPGDCVA FFYKNQKLDD FSTVRRKQQL KKRRLQADMR KQQYAPLLMA 1800 PMIARQRASM GAGAGDVGVR GVRGRASTRG GPPGRGRSSN TLDTDHSMGM GPLSYGGNPG 1860 PAALAMSLGG PRGVPSSGGM PGLQSMIAAA QRAAAPSMSL DPRDIITSPR LPPISSNATA 1920 AYGAGVSGGS GASLVPSGAA AAGWTDEDFV ECYRQHGKCW EAYCRVLGMR TESAAKQYYY 1980 RHKERLGLDR VSATGGPSGG GGSGGADATG VGASNAAATG GMAAVPTASA GGPSHKAFLA 2040 ARLANEESAA PGLLAAATAA AAMANAAAAA AAAAANAGPG SSAAAMEELA PPSRAVAEAS 2100 PLRTEDAAVA GLGLLAAVSG RESESQYPSP SPPPQPPPQA QAPVDVPSLQ TQVQTQVPVQ 2160 VLEQARAQAQ AEAQAAAQAL TQVQVQQVLE QVRVQAVAGG EVQAAPPSVQ QPEQQTQPPQ 2220 APVMLIPRHP GGRRRGPPRV PANPASLSNG PHASASSLES NEMLRHDGRY KQDLDPDTRS 2280 DSEYDPSGAG GAGGVDALQP QLDLLAALRN PVGNPLSQLL VGGLLQPGGG AATAPGGSGG 2340 SSTAAAGGGG VKGGKGAAAG SNATVGSGAS GGLLGQLLLQ QREQQQREQQ QQQQREVRDP 2400 QPAQGPGALG TLTAAGLNLG MLGSLAGVLQ GGMGNGGGSS GAAAAMGLLA GGQFPSPGED 2460 GPGGAGSGGG AGTAPSSSRR SVNYWSDDER KTFLQVFQMH GRDWLRLADA IPTKSTNQIK 2520 TFYHNYKTKL GLDKMELPPS ATQPAARRGQ GARAIRDTAA AANAATVAAV TGGGNRGFDD 2580 PYGDEDHPRP AKRQATGAGV GTSQSSGLEL GTLAGDVSSP RGDGSGGGTS PVLPPVMDLQ 2640 ALAHVYGGGG GGGSGGAQAS SQHLFRRDHR DHDLAGLTGT GPAGAAAINA PASASALIQL 2700 LSSLSELQGA PASGGASGVQ ALGGRESDEG LGLGRGALGA LGGPMQLHGI NLPTGGGGGG 2760 ASSASNLFST AGQVSPQQQQ QSQQQAPVKL QTLNLESLFV PVDRERDRDR DRDRDREQRD 2820 RGVGGGSCGP GGGMLQDVGL SAFAQQLQLQ ALLERSERGN QLREHEQPPP PAHAAPPSQP 2880 QHRGISQQEA PLSPEGLTAT VAELLASIVQ QNQQSQQSQY AVGGGGGGGG PAAAQPTSQA 2940 LDLAAPSHAL TLALDVPTSG SSATPSGLLT ALVEATTGGT AGLGTAGLGG VGGAGGTGDM 3000 AAALAAAAAA AVAGGGGGAR AARASGEAGP GGGGGAPLSL HMLLPRELWA DRQGDVKTQS 3060 DVGFNDNAGE PAPKRQKRVS KDVQQQQQLS PQGLDLGLPS GLAVGGRTGG DSGCAGRLLL 3120 GEEQVTQLLH LQQQQAAKVK PVGTAGLRSV GYQQVRESRG REQQQRSAPQ AANPVLNLGS 3180 LAGGLQVLPG AGGGNAGGGG GGGGGGCSGG SGSVLGPNLL RLMPLQSAPA STQQQQQQQQ 3240 QEAGNGGGNG GVPRIPLGAS LPSQVMVGTQ GQAVTIADLI SSLGGGRGLV AQGQGGGMFG 3300 LAGGSFASLE RLLASSQEAG LGGSSAGAQY ISLHPSTAAA GTGTWLGSTF GDQLASLGPR 3360 ATLNLSLLLQ QQQQQQPGDK *

Sequence ? help Back to Top

Protein Sequence Length: 3381 aa Download sequence Send to blast

MEDNREAYRR GLGHGRLHSY EGPVSPRDQF YGGPLRENRE VFRRPSYGFT SPLGRAGNYN  60
GPTGPVSPDC DRPRGYSPDR RPYSPEHDRR AYSPERPDRD RGPRYQIQER TNGYRPREEG  120
FRREAYGYRG EDSRPPARSR DPSPDHHHSH YHSGREQLQP LRDRGPDMDL HPRAASREGT  180
PLDSWSMERG GKLPLMPSVP SHGHGSSRGG GHRGGSNSSG SLRGAGAEYQ ENGPSNGDLE  240
AGEVAPGPGS RGDHARPSPD QHHSHHHAPH HHHHSSYHGP HSHHHGPGAG PGTGSGPVSS  300
SHLSHHGTHR SASSALLSPR GGGPSGGWEP KSGHLSAGIG SGPGLGQSGG HREGPPPPRE  360
GGREVTGRDT ARDAGARDPR DAGKIGYRSA SLPSGVQQQS TRDGQGRLEG GLARDGSFSG  420
RDRDRDRERD RDRDRERDRE RDKGTTATVS FSHAARSSSQ GVPAPSPGQS PRRTGSDMAT  480
GQGAGAGGSG EVQQAPPVVP DRGREGIISV VELPQQQHQQ AQQQLRWGSG TSSAIQHQQQ  540
PSSSPQQQQQ QTGLGRCVSS GTAAPSASAG GASEAMAAAG VVGGAAAGPS PGATMEVERR  600
ASNTSMELDR RYSSGTAPGS GRLDRKPSGS SSQGQAPGLD AVTQLARVST AGTAPFPLDR  660
PTAAAVTPSP AARAPASAPA AASTQPPTSP VDVKGAESAD RRPNRSSKPA HAGASCASAA  720
AAAPSLAVAA VPPSASPSAV VMAPPSAVAV APSESRPSST AGAGSDGGAG AAPGIPAVAS  780
VNSLSTADTQ AGAPVATGRA ASVSAPEAEP GELPGDGQTQ AARAPSLQPM GPTASPSAQA  840
PSAAPSQPLA TVCGPRVPAS IATQPQAVQV PSPPSAAAAQ PPLHPTQQEP VQQQRPAEES  900
VPSTTPVSGV IAGAAGAVDA VTGPSSSASE APFARLSCSG GQTSEHPPAA TLSTMPGPRG  960
LGGSTAQPAP HGSGAAAGAG EDALLPEKRS SLSIRRFGFG RARRSMPAKS AGEGGAPEDG  1020
EVPGGAVSLE RAPSGAGRPQ PPGEVVDPEV PGTILAAGTA GGKESYAALP PSLVVPEPAG  1080
APPTAAAGVA AAVSTPMSVP GMTTGGFLPT PIPAALTPGG ACMPHVGGFT PHYGTATSYS  1140
QLTSPVAGPM ATPSAAAATT PAATAAATMS IGVALATRSS SSAPSGSGAG AAATGNCAPM  1200
EVDSHNAAAS QDVVHKMQQQ QQPQQSSADA AGSSRNPAET LAGLSLRIEH LETEITDLER  1260
QLAALASESR QAQIDAAELA AEVGALEEQL LEDSSSDGGD SDENISGAPG ESKSSQPVAE  1320
GDADANGVDR SGGSASSANG ECGREGLATA APVMTAQTPV QEVPGSHHQA ATTTADGNSA  1380
GIQPAQGDGD GATQMDTEAE GLTEAAEDDG DDAAMSTKSQ DADEAAAAAS SIKPRGRPRS  1440
TAKMRAAEAA AAAAAAADSR RKALELQSRN PADGLLHLPA QHFKPRYMDA TRRGVSAAQE  1500
EVLRLLPDSL AARVRSVVEA ATAQQARLAS TAPAPGHGRW AVLVPLVPVQ VEPLYQEPQD  1560
IPAFHANNQR HAAIRDAVGR YLRQRRQLVA AKHSVLVEQY ARNMATYKQY IQTEGRRPPA  1620
PPPPLSTTGR GASGAPSYGM YGASRAVSSY NPYSYSHSDV IRSDLDEHRL LNNFLAVEQL  1680
KRMCALPDMV LDPWERRWRA YDNRNGLVQD PVRELEEERM IKSWAEEERT LFMDKFLQHP  1740
KDFRKISTYL PGRSPGDCVA FFYKNQKLDD FSTVRRKQQL KKRRLQADMR KQQYAPLLMA  1800
PMIARQRASM GAGAGDVGVR GVRGRASTRG GPPGRGRSSN TLDTDHSMGM GPLSYGGNPG  1860
PAALAMSLGG PRGVPSSGGM PGLQSMIAAA QRAAAPSMSL DPRDIITSPR LPPISSNATA  1920
AYGAGVSGGS GASLVPSGAA AAGWTDEDFV ECYRQHGKCW EAYCRVLGMR TESAAKQYYY  1980
RHKERLGLDR VSATGGPSGG GGSGGADATG VGASNAAATG GMAAVPTASA GGPSHKAFLA  2040
ARLANEESAA PGLLAAATAA AAMANAAAAA AAAAANAGPG SSAAAMEELA PPSRAVAEAS  2100
PLRTEDAAVA GLGLLAAVSG RESESQYPSP SPPPQPPPQA QAPVDVPSLQ TQVQTQVPVQ  2160
VLEQARAQAQ AEAQAAAQAL TQVQVQQVLE QVRVQAVAGG EVQAAPPSVQ QPEQQTQPPQ  2220
APVMLIPRHP GGRRRGPPRV PANPASLSNG PHASASSLES NEMLRHDGRY KQDLDPDTRS  2280
DSEYDPSGAG GAGGVDALQP QLDLLAALRN PVGNPLSQLL VGGLLQPGGG AATAPGGSGG  2340
SSTAAAGGGG VKGGKGAAAG SNATVGSGAS GGLLGQLLLQ QREQQQREQQ QQQQREVRDP  2400
QPAQGPGALG TLTAAGLNLG MLGSLAGVLQ GGMGNGGGSS GAAAAMGLLA GGQFPSPGED  2460
GPGGAGSGGG AGTAPSSSRR SVNYWSDDER KTFLQVFQMH GRDWLRLADA IPTKSTNQIK  2520
TFYHNYKTKL GLDKMELPPS ATQPAARRGQ GARAIRDTAA AANAATVAAV TGGGNRGFDD  2580
PYGDEDHPRP AKRQATGAGV GTSQSSGLEL GTLAGDVSSP RGDGSGGGTS PVLPPVMDLQ  2640
ALAHVYGGGG GGGSGGAQAS SQHLFRRDHR DHDLAGLTGT GPAGAAAINA PASASALIQL  2700
LSSLSELQGA PASGGASGVQ ALGGRESDEG LGLGRGALGA LGGPMQLHGI NLPTGGGGGG  2760
ASSASNLFST AGQVSPQQQQ QSQQQAPVKL QTLNLESLFV PVDRERDRDR DRDRDREQRD  2820
RGVGGGSCGP GGGMLQDVGL SAFAQQLQLQ ALLERSERGN QLREHEQPPP PAHAAPPSQP  2880
QHRGISQQEA PLSPEGLTAT VAELLASIVQ QNQQSQQSQY AVGGGGGGGG PAAAQPTSQA  2940
LDLAAPSHAL TLALDVPTSG SSATPSGLLT ALVEATTGGT AGLGTAGLGG VGGAGGTGDM  3000
AAALAAAAAA AVAGGGGGAR AARASGEAGP GGGGGAPLSL HMLLPRELWA DRQGDVKTQS  3060
DVGFNDNAGE PAPKRQKRVS KDVQQQQQLS PQGLDLGLPS GLAVGGRTGG DSGCAGRLLL  3120
GEEQVTQLLH LQQQQAAKVK PVGTAGLRSV GYQQVRESRG REQQQRSAPQ AANPVLNLGS  3180
LAGGLQVLPG AGGGNAGGGG GGGGGGCSGG SGSVLGPNLL RLMPLQSAPA STQQQQQQQQ  3240
QEAGNGGGNG GVPRIPLGAS LPSQVMVGTQ GQAVTIADLI SSLGGGRGLV AQGQGGGMFG  3300
LAGGSFASLE RLLASSQEAG LGGSSAGAQY ISLHPSTAAA GTGTWLGSTF GDQLASLGPR  3360
ATLNLSLLLQ QQQQQQPGDK *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	5e-14	1680	1771	3	93	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	5e-14	1680	1771	3	93	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	430	442	RDRDRERDRERDK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002946132.1	0.0	hypothetical protein VOLCADRAFT_127385
TrEMBL	D8THU5	0.0	D8THU5_VOLCA; Uncharacterized protein
STRING	XP_002946132.1	0.0	(Volvox carteri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP2883	10	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	1e-16	MYB family protein

Link Out ? help Back to Top
Phytozome	Vocar.0002s0544.1.p