PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0003s0248.2.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family GATA
Protein Properties Length: 823aa    MW: 81750.8 Da    PI: 4.6772
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0003s0248.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.12.1e-175685130
                 GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyy 30
                         C+ Cg+t+Tp+WR+gp g+ktLCnaCG++y
  Vocar.0003s0248.2.p 56 CVECGATQTPQWREGPAGPKTLCNACGVRY 85
                         ****************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.4795085IPR000679Zinc finger, GATA-type
SMARTSM004011.8E-1150106IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.8E-145388IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577165.23E-125390No hitNo description
CDDcd002022.09E-1255105No hitNo description
PfamPF003208.2E-155685IPR000679Zinc finger, GATA-type
PROSITE patternPS0034405681IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0003682Molecular Functionchromatin binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 823 aa     Download sequence    Send to blast
MEVEDGRRHG KRSQAGISGH VEGVADSEEV KRQRVAEEQP AAPVRRTGKL VSGRTCVECG  60
ATQTPQWREG PAGPKTLCNA CGVRYVRAQQ RANKRAVPAG AARSGYGAGG RQSRTSKAAK  120
AEVASARAAR TAAVVPAAAA GMAPGEEASQ RPQRQAALMA ASRTAQYART GFFPLDTIDL  180
QQQQQQHTPD NAAINGQIAM HHQHHQHEAD MGDVLTGAFG GVSSAGAAAA GAAAAGPGSP  240
NCSSYDSCGS LQEGVTVEVV VGAADGEAEC CGGSVAAVAP AAAAAATAAT VPTYPLLTSS  300
SVGAAAGSLM PTPAQLIGGS GIMLGGVEES VMAVAPVMAL PLGEGQLQSA VPGALQTASA  360
VAAAVAAAGV LGTASSEFVL ECDTTGSGMF FASGLDCQFS GDGVCYPADS HHHHHHHHDD  420
HDQNGVCHHS KTGCVAPAPS GGQCDTAAVY QGTGAVSCVA QVKSVPVSPC VDVDGAGFGC  480
GGFGSVSRML DGVLASARGY GSQLGCGLVG GLDDEYTPLV EVEVDFGLGP ASAMGDGSLF  540
DGFDSGTCGA DTVEDDDPQH PQSQPLLAQG PALSASQSQL QLPLPTTLVQ QQRQLQQQHE  600
EQGDYGEGNM GVVDLSAVAA RVAAFCPDLA PGTDARTLLD SLPLLAQTAF LPHGAGSAAA  660
AALAVGDADA ISLVAAAAPT SVTVSAADSA ASDEGSCSVG VAVGGAVPGE AVKHLVALGR  720
QAQCAATEAM AADAALQAAN QVLEAHQEAA RKAGEVAVSK LGLLKDCIST LAGGGEPLVA  780
GEVGGHFIDL HDLGTVGGLG DMAATGCCYS FDAADLLVAV HS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00048PBMTransfer from AT4G32890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002957265.10.0hypothetical protein VOLCADRAFT_98336
TrEMBLD8UF310.0D8UF31_VOLCA; Uncharacterized protein
STRINGXP_002957265.10.0(Volvox carteri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.15e-14GATA transcription factor 9