PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0004s0259.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family ERF
Protein Properties Length: 245aa    MW: 28444.2 Da    PI: 5.2072
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0004s0259.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2636.3e-2070120256
                  AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                          gy+GVr+++ +g+++AeIrd       + kr ++g+f t+eeAa+a+++a+++l+g+
  Vocar.0004s0259.1.p  70 GYRGVRRRP-WGSYAAEIRDaS-----SgKRRWIGTFKTPEEAARAYDEAALALHGP 120
                          8********.**********55.....45**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.27270127IPR001471AP2/ERF domain
SMARTSM003808.1E-3070133IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-2070128IPR016177DNA-binding domain
PfamPF008473.5E-1370119IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.4E-2871126IPR001471AP2/ERF domain
CDDcd000185.56E-2871126No hitNo description
PRINTSPR003676.0E-97182IPR001471AP2/ERF domain
PRINTSPR003676.0E-993109IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MLYNFMPSGA LQVLIPLGAF HHEEHVPSSE EEPFVQRPVT RRKRALDEDP DYHDSRPAQN  60
DEHGPINKVG YRGVRRRPWG SYAAEIRDAS SGKRRWIGTF KTPEEAARAY DEAALALHGP  120
RAKTNFVYDC QMQRQQQQQQ QQPAKSVQVL QMVFRRDSDD SNCSMTAPLP YTDYLVTTDA  180
QRQRQQHQQQ DEQLEHEKQD EQQDEQQEGD EQEQDPQQQQ QQQPRLEALV EVAHFFGRRD  240
FAMA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-18621321177Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002949626.11e-133hypothetical protein VOLCADRAFT_90047
TrEMBLD8TTC71e-131D8TTC7_VOLCA; Uncharacterized protein
STRINGXP_002949626.11e-132(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1321540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.19e-15DORNROSCHEN-like