PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0005s0116.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family ERF
Protein Properties Length: 1612aa    MW: 164626 Da    PI: 6.584
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0005s0116.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.73e-1811161166256
                  AP2    2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56  
                           +y+GVr+++ +g+++AeIrdp +     r +lg+f+tae+Aa+a+++a+++l+g+
  Vocar.0005s0116.1.p 1116 RYRGVRQRP-WGKFAAEIRDPAK---GGRLWLGTFDTAEDAARAYDEAARSLRGA 1166
                           69*******.**********954...38************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.24811161173IPR001471AP2/ERF domain
PfamPF008471.9E-1111161165IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-3011161173IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-2011161174IPR016177DNA-binding domain
CDDcd000186.04E-2811161173No hitNo description
SMARTSM003802.1E-3511161179IPR001471AP2/ERF domain
PRINTSPR003671.6E-911171128IPR001471AP2/ERF domain
PRINTSPR003671.6E-911391155IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051301Biological Processcell division
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1612 aa     Download sequence    Send to blast
MQAPQLSQAA LQLLHPWQPY EVSYKSHHSN VAAAAPPPSA RPAARPVVVI GHQRQGLVQG  60
QGSSGRGLPQ PANGRASSAQ LQQQQQRQQQ RRVSNGDIPV GSTAVAAAAA GSSRRHPQAE  120
TSGDIPVVIN SRGPPSGAAV AAAAAVGVRR QALKATDPPS RTLHLSYQAP QHRLHSMPPA  180
RAQSSQHPHQ THFHHAHHSH PPQPRQPLPP QPPPPQLPYP PRHASAPPSR APQAAPSSSE  240
LHGPSVNTHG RTGNPAMTAS IRGGVLTLQL QLSEIHELAG AADGDNAGYA ITPMDLTSGQ  300
PLGPSLLLST VSLLAAAAAS AAAAAAERAG PLLRESQELP PPLQQQQQQR QQRYHDAGGA  360
ASTAAAAAGS GSYSSQRVQR RSDEESPMEP SSGGNQLQLT PVPEDDKALV DTPAAAPLPL  420
PAPQNGGVGQ LEGTANGVVQ PDDGKGEALR QAARRSGRLG SGGGGGDGDV NSVDSGRDVS  480
GGGGAAHGRS AWDDTAAPAM MSAGNGCGSS GSVAAAAAAA AATALNAYRN GNPAAAAAAL  540
AVFRKYQAQQ QRQRQDRYLD TRMDELDPDK DLYEHERHPS HAKGPGALAR SFDGGGSVRQ  600
DNSDGPDTTV FCNSRHSLDL GAHGAPIGRY DAVRTAAGRY VEAPYDDHDD VDTLATRGFV  660
RRRASEVGPE PSSWSWGGLH EGHRVAAVAA SAEPLRQQQQ MYSQRRLSST YPYRQPPPQC  720
WSYRPVQYVE PPYEGSDNPY GPADEHYEYD KFLPQPTPSA DFLLEGGTRK RPRVASAPAA  780
TAAPGGTAAA AAPSPRSGSG GAAALLDLNA MHVGPRSQNG LSERTTEYVV PEGPHAGVAR  840
LRLPLPVTQL AAAAGRAGVA NASAYMKAAA AAAAAALKSQ NRYGPAAAIG AAADEGKLGA  900
AAGRTDGSAA FPSRHGTATG GDMPSGGAQR AEPLVSPSAR RTDRSAAAGD GATAAAAAAS  960
GHAALHQQAR QKFKAAPERE RGTDMTRAGA AIAAAAMAAV ASAGPGQVAG GGGDDDRDSE  1020
MTESIGVAMS SPGSAAAVAV AGGNGDVDGP VDAAARDGGG GACDAAAAAT GGAAASSPPA  1080
AAAQQPTARG TADAPKGPTP KLKPGPVAAR ARGAVRYRGV RQRPWGKFAA EIRDPAKGGR  1140
LWLGTFDTAE DAARAYDEAA RSLRGAGARV NFPLPAECGE EGEEEGAAAN RALSDGEVHG  1200
EVVQGGGAAA VAGPRGGAGT RGGAASVANG TSGEAAGGAT CWRRTSQNRH GTDPWTGFSG  1260
LEAIVAAAAA VAEEEEAEAR RAAAAAAAAA AAVAESRQPP PQHQEHSPLQ GERRLDVPQR  1320
GPMSVGAVVA AAAPPQRLEA AWRDRGGEFS PLDLDLDHHG DAEGPGAQEH ARQRHHPELQ  1380
QIESSGGGGS GGGRNGAQRS LWSGEDADAK VDSGEGRGEE SGGGPGQEGR VRPVDCPSDG  1440
GGRLVVVPRG VGRALGPARV RTDDLLTAAQ VLLETGGGGR TAFLPLVARL KREPMEYGQP  1500
YAVVRPPTVS LEEEVEVGGH DLAAARMVVA QKMNCPEYSA DETHGSGKQQ QHPQPCTPRE  1560
GDAFPETGID ESVVEVMEEE EEPPQRRQRV DLAEEEVEAA CGEYVDAPIC A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2311171180670ATERF1
3gcc_A1e-2311171180670ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00548DAPTransfer from AT5G47220Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002951671.10.0AP2 family transcription factor
TrEMBLD8TZ590.0D8TZ59_VOLCA; AP2 family transcription factor
STRINGXP_002951671.10.0(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1321540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.13e-12erf domain protein 9