PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vocar.0005s0296.1.p

Organism

Volvox carteri

Taxonomic ID

3067

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox

Family

GATA

Protein Properties

Length: 623aa MW: 64260.8 Da PI: 7.2395

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vocar.0005s0296.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	41.1	2.5e-13	95	129	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t Tp+WRr nk LCnaCG+++ ++g+ Vocar.0005s0296.1.p 95 CMWCGVTATPQWRRPRGTNKLLCNACGIFFTRYGR 129 99*********88877777*********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00401	2.5E-6	89	142	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	11.873	89	128	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	2.9E-9	93	132	No hit	No description
CDD	cd00202	5.30E-11	94	129	No hit	No description
Pfam	PF00320	3.2E-11	95	129	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	8.6E-10	95	129	IPR013088	Zinc finger, NHR/GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 623 aa Download sequence Send to blast
MGEAMLESGV FAHAKARALL EVVRLAFEGG IGFETESLGS NPATAQGNSE DHTANNGSSR 60 PKIKHAKEYA QHPAHGPHRP ASTGSSSRLV PGGPCMWCGV TATPQWRRPR GTNKLLCNAC 120 GIFFTRYGRL PERTHHVHAA VGQAAATETT AGESVITSAG ATGNVPRPAA QGDVSPSPVE 180 PADRLSANAA GADHPRGPLA VPGQPQEHHH QQQQQQQQPL VASPPALPTW HEEQQQHTGS 240 AFSLLEGKGP HKRKAPPQSE PELRLRCIEE HCPKGANPLS TDVESAASPA PPPVPKSRPS 300 APTQQPRQLF GLAQQQPQLT SAAVAADQSP SSSLTVAPLD LNLQRISEMQ QLGLLRPSLA 360 GLGAPPSVRY LQDPVVAAAA GGSTGTASGS SAAATLAAAA ACALRWLQSP ELMGPATILP 420 AILPGELLVS PYVLPLVRMP GGADAAAQPP QPPLYGRPAK RHERLPVGES EDSNVSTDSH 480 TAGQCDAGGT SHDEDEGGTT TTGPTITTTT TTANTANAGT ASSSVVVKLP SGLACSPHAM 540 PGGTQSRLPS NPIYALAAAA AVLPTLADAV PEPSDDGQLR HQLVQLQQQL QQQQEVIFLH 600 ACKSKGPRSR AASATPSSST LS*

Sequence ? help Back to Top

Protein Sequence Length: 623 aa Download sequence Send to blast

MGEAMLESGV FAHAKARALL EVVRLAFEGG IGFETESLGS NPATAQGNSE DHTANNGSSR  60
PKIKHAKEYA QHPAHGPHRP ASTGSSSRLV PGGPCMWCGV TATPQWRRPR GTNKLLCNAC  120
GIFFTRYGRL PERTHHVHAA VGQAAATETT AGESVITSAG ATGNVPRPAA QGDVSPSPVE  180
PADRLSANAA GADHPRGPLA VPGQPQEHHH QQQQQQQQPL VASPPALPTW HEEQQQHTGS  240
AFSLLEGKGP HKRKAPPQSE PELRLRCIEE HCPKGANPLS TDVESAASPA PPPVPKSRPS  300
APTQQPRQLF GLAQQQPQLT SAAVAADQSP SSSLTVAPLD LNLQRISEMQ QLGLLRPSLA  360
GLGAPPSVRY LQDPVVAAAA GGSTGTASGS SAAATLAAAA ACALRWLQSP ELMGPATILP  420
AILPGELLVS PYVLPLVRMP GGADAAAQPP QPPLYGRPAK RHERLPVGES EDSNVSTDSH  480
TAGQCDAGGT SHDEDEGGTT TTGPTITTTT TTANTANAGT ASSSVVVKLP SGLACSPHAM  540
PGGTQSRLPS NPIYALAAAA AVLPTLADAV PEPSDDGQLR HQLVQLQQQL QQQQEVIFLH  600
ACKSKGPRSR AASATPSSST LS*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002954164.1	1e-128	hypothetical protein VOLCADRAFT_94929
TrEMBL	D8U655	1e-126	D8U655_VOLCA; Uncharacterized protein
STRING	XP_002954164.1	1e-127	(Volvox carteri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP11480	2	2

Link Out ? help Back to Top
Phytozome	Vocar.0005s0296.1.p