PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vocar.0005s0508.1.p

Organism

Volvox carteri

Taxonomic ID

3067

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox

Family

G2-like

Protein Properties

Length: 2546aa MW: 256892 Da PI: 7.1811

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vocar.0005s0508.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	78.7	7.1e-25	1589	1642	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +pr+ Wt+eLH rF+ +v+qL G e A+Pk+il+lm v+g+t+e+v+SHLQkYRl Vocar.0005s0508.1.p 1589 RPRMLWTHELHCRFMAVVAQL-GVETAVPKNILQLMAVDGMTRENVASHLQKYRL 1642 59*****************.9*****************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.42E-16	1587	1646	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.9E-25	1588	1646	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.9E-20	1590	1642	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 2546 aa Download sequence Send to blast
MQGDSNSWQQ VGDPAASSHA ARGHVTNASP LMNSLDLETA AQLQIHQFQQ LQQQQQQQQQ 60 QQAMLIAHLV QAQAQAQAQR AEGEDAATAA ARAIIALLGP SLAAAAAFQL SLPPAVQLQN 120 LAQQPPQQQP APRGQNIVTA REDPPTRRQQ APAAAAGPLT GPVSQAPALS AGGPPAPLPR 180 ISSAMPQTAA SRVGNGGTSR RGQLRNHISP PQLINPRGRD ASGPCAPSDL RATCAAEECS 240 PGPEPEWEGW EGEASGSAQV PMLCEGQRPR EDERLGRPGD IRPHSNNHPQ LRHSSGGGGG 300 GGTGKRQRQP SSPDLPRRLQ QPSQQQPPGD QLPGPPPPSP LPEQQQQQQQ QQQQNQQQDQ 360 QEEEEERSPR LPRPRAQRFI PPPPLSQQQQ QMLSADRDSD SADSRDRQRL HQGQPPQQQQ 420 MLLPRPAASP SGITAQRDGQ PGTGPGSGSA ALSAAAAAAA ALTAAWQATV GAVQAQAQAQ 480 AGSPPLLPAG LQALSGLLNP LAMNPGAIWA AMTPAATAHA TQQQQQLSAL QQHDQQQPPT 540 ALDQLASLLL PRAVGQVRGD GSSRQQQAEP PPPLPSAKHH HHQQLQHHYR KPLYGAHLRN 600 PQTPHSRCAR GDSDGDQEPA HSSGASGSGS GGEERSRSVA SGSGSGSAVM PRLYGGGGGD 660 RGRSGGENGE NGRLSAGSGG AAAAQPSARH RTHRGGGGDG GGGGIATGNA RSVLRPRPRP 720 PSPGGGWMPT LGGLLGPQQQ QQQQQQPQQP QRRREDGGGK LMRSNTAAVP AADAAEELAD 780 VGTDADADGD SPMRDGGDCA LRRPAPAVKA EEEDQHEGLP RGLGGPRSGT PTGHMQPQTG 840 ASAVQGPKPQ SSCRLSLVRL QRPEAAAADQ TPAPPPPPQQ QQHKPLRQPQ LALTAAATTA 900 GSNTEAGGKL LLSRSQPPLA AVASAEVIIA PVAGAAGAAA EGSLAGGHSG NAGGPYVAET 960 AAGSPHAVCA GAPGGHKRAL ADTAWRQSSG QLSPSRGGGC GGSGEEGREG PPKHRHLSSP 1020 AQQQQLFPSG GSGRSGTWPE GAAAATAPQQ QQQQQTAGVT GASRSGLGGA PHIPSDSPHI 1080 ASRSQNPPPP PHPPTYPYTH LQQQQQRLSR QLQAQQDAHP RQSGRHQHHQ HHQHRHHHHH 1140 HHYHQRRSDT LVGHQRRGEV KMEEGHAEAG DPWTAEDMMQ GVGGAALPLR APGAPTRSTS 1200 LLLAAAVAAA AEQEGCCPDE HMQEQEQEGS RSSHCSDTDG DGEGAGSGGG GSGDGSGGEG 1260 DADGGGSGGD GDGSGGGSGS GGNGSGASRI TAGVGVSGTA GGGSHPGGGG CGKPQQHHRA 1320 ASARIKPSTA EADAAATLSL MVKPLAAASA TGAKATSWQA AAVVAAGGAA AATAGGGGGS 1380 GSGALLGPTA QEKAPAAMAT MPPPPPPPSG TMDRADAATT VTTTETAVHL DEHQHGQRTD 1440 AGGRAVQHQQ PQAAPGGGIS GGDSASLGMR LQLEQQQQQR TEGHGALMPS LTIALAAAAA 1500 VAAAAAAGGA APAPTSAECS GGGSDSPAGA SAAAATWRHR VSAPGSAPGA AAAGGTAAGL 1560 SAGTSGAGGA GTGSGTDPGG SNAARVARRP RMLWTHELHC RFMAVVAQLG VETAVPKNIL 1620 QLMAVDGMTR ENVASHLQKY RLYLRRLAGV PPNSPIPPHL IDNVQLQAMR AHMLKHQQQL 1680 HQAATMQVMQ ALRPELTAAA AATACSNVMA AAPPLPGSTT LGAAPSLPLP QPHPLDSNQA 1740 SQRQQQAASM AAAAGMLGGV QQLGRGVTPQ LQLKLQLSAL QGIGAFAGPG AAPGIDLPET 1800 QAAVNGDTLD TSAAALGGSL SGPQLAQQQQ QQQQAGARGF VNGSSSGAAG VAAAGGLSVL 1860 LERGGGVGGG GGGTSLLLPG GLPPAVGGPR GPAADAARGG DGGGASQQQG VGNSNVLSAA 1920 AGLPVLGSQP QQQQQNQVQP QQAALGAMWQ QVHQQWQAQQ QLAALAALAQ SQQQQQQQHN 1980 LLLQLQLHHQ HQQWQQLQQW QVQQQLVQQG FAVLQQQQQQ QPLLGISPGS WCVQMPPQMP 2040 SDKDLAEGPA GVIAAAVAAQ QQQQQQQQQT QLLSSASQQL APASQQQLTN HQPQQQQQQQ 2100 QQQPDQQQQP QMCPGAGTSG CLDDAPQQPS SQQEPYVPAA LQGPQGIASP FAAQYGFYGS 2160 ALQPLGLPVV SAAAAPGLGP GSGGSGALGP LGPFGGLLGG GCGGGGDGSA AGGNPTAFLP 2220 PPYGSPAGAD QGAALHQLYA QQQQQQQQLQ LQQLQQLHQV QAHYLLQQQL QQAQVSGTGA 2280 GVLGGQVPGG SSAVFGSGAL TGLAAVTAAP VPGPGPQPGA ALPSVQQPQQ MMAMETPLWG 2340 LSGDVPTPFT QPPAVNMAGG GGGAVPYPYG LQGASPWSLA AQASPALLPP LQSLEGAGAG 2400 YKQDASTSLP QQQQAAAEAA ALQQPTGLLD QPQVQVRRLS SDRGGGDPGP AVNRCELPLQ 2460 GLFSSGSHRG ASMGAGGGTG RQDLGGGAAA GAAAAGVGVG VLLSSSGSDC GVTAAAAAVG 2520 QPPDSLSSGS LEYQFPHLAQ LFQQQ*

Sequence ? help Back to Top

Protein Sequence Length: 2546 aa Download sequence Send to blast

MQGDSNSWQQ VGDPAASSHA ARGHVTNASP LMNSLDLETA AQLQIHQFQQ LQQQQQQQQQ  60
QQAMLIAHLV QAQAQAQAQR AEGEDAATAA ARAIIALLGP SLAAAAAFQL SLPPAVQLQN  120
LAQQPPQQQP APRGQNIVTA REDPPTRRQQ APAAAAGPLT GPVSQAPALS AGGPPAPLPR  180
ISSAMPQTAA SRVGNGGTSR RGQLRNHISP PQLINPRGRD ASGPCAPSDL RATCAAEECS  240
PGPEPEWEGW EGEASGSAQV PMLCEGQRPR EDERLGRPGD IRPHSNNHPQ LRHSSGGGGG  300
GGTGKRQRQP SSPDLPRRLQ QPSQQQPPGD QLPGPPPPSP LPEQQQQQQQ QQQQNQQQDQ  360
QEEEEERSPR LPRPRAQRFI PPPPLSQQQQ QMLSADRDSD SADSRDRQRL HQGQPPQQQQ  420
MLLPRPAASP SGITAQRDGQ PGTGPGSGSA ALSAAAAAAA ALTAAWQATV GAVQAQAQAQ  480
AGSPPLLPAG LQALSGLLNP LAMNPGAIWA AMTPAATAHA TQQQQQLSAL QQHDQQQPPT  540
ALDQLASLLL PRAVGQVRGD GSSRQQQAEP PPPLPSAKHH HHQQLQHHYR KPLYGAHLRN  600
PQTPHSRCAR GDSDGDQEPA HSSGASGSGS GGEERSRSVA SGSGSGSAVM PRLYGGGGGD  660
RGRSGGENGE NGRLSAGSGG AAAAQPSARH RTHRGGGGDG GGGGIATGNA RSVLRPRPRP  720
PSPGGGWMPT LGGLLGPQQQ QQQQQQPQQP QRRREDGGGK LMRSNTAAVP AADAAEELAD  780
VGTDADADGD SPMRDGGDCA LRRPAPAVKA EEEDQHEGLP RGLGGPRSGT PTGHMQPQTG  840
ASAVQGPKPQ SSCRLSLVRL QRPEAAAADQ TPAPPPPPQQ QQHKPLRQPQ LALTAAATTA  900
GSNTEAGGKL LLSRSQPPLA AVASAEVIIA PVAGAAGAAA EGSLAGGHSG NAGGPYVAET  960
AAGSPHAVCA GAPGGHKRAL ADTAWRQSSG QLSPSRGGGC GGSGEEGREG PPKHRHLSSP  1020
AQQQQLFPSG GSGRSGTWPE GAAAATAPQQ QQQQQTAGVT GASRSGLGGA PHIPSDSPHI  1080
ASRSQNPPPP PHPPTYPYTH LQQQQQRLSR QLQAQQDAHP RQSGRHQHHQ HHQHRHHHHH  1140
HHYHQRRSDT LVGHQRRGEV KMEEGHAEAG DPWTAEDMMQ GVGGAALPLR APGAPTRSTS  1200
LLLAAAVAAA AEQEGCCPDE HMQEQEQEGS RSSHCSDTDG DGEGAGSGGG GSGDGSGGEG  1260
DADGGGSGGD GDGSGGGSGS GGNGSGASRI TAGVGVSGTA GGGSHPGGGG CGKPQQHHRA  1320
ASARIKPSTA EADAAATLSL MVKPLAAASA TGAKATSWQA AAVVAAGGAA AATAGGGGGS  1380
GSGALLGPTA QEKAPAAMAT MPPPPPPPSG TMDRADAATT VTTTETAVHL DEHQHGQRTD  1440
AGGRAVQHQQ PQAAPGGGIS GGDSASLGMR LQLEQQQQQR TEGHGALMPS LTIALAAAAA  1500
VAAAAAAGGA APAPTSAECS GGGSDSPAGA SAAAATWRHR VSAPGSAPGA AAAGGTAAGL  1560
SAGTSGAGGA GTGSGTDPGG SNAARVARRP RMLWTHELHC RFMAVVAQLG VETAVPKNIL  1620
QLMAVDGMTR ENVASHLQKY RLYLRRLAGV PPNSPIPPHL IDNVQLQAMR AHMLKHQQQL  1680
HQAATMQVMQ ALRPELTAAA AATACSNVMA AAPPLPGSTT LGAAPSLPLP QPHPLDSNQA  1740
SQRQQQAASM AAAAGMLGGV QQLGRGVTPQ LQLKLQLSAL QGIGAFAGPG AAPGIDLPET  1800
QAAVNGDTLD TSAAALGGSL SGPQLAQQQQ QQQQAGARGF VNGSSSGAAG VAAAGGLSVL  1860
LERGGGVGGG GGGTSLLLPG GLPPAVGGPR GPAADAARGG DGGGASQQQG VGNSNVLSAA  1920
AGLPVLGSQP QQQQQNQVQP QQAALGAMWQ QVHQQWQAQQ QLAALAALAQ SQQQQQQQHN  1980
LLLQLQLHHQ HQQWQQLQQW QVQQQLVQQG FAVLQQQQQQ QPLLGISPGS WCVQMPPQMP  2040
SDKDLAEGPA GVIAAAVAAQ QQQQQQQQQT QLLSSASQQL APASQQQLTN HQPQQQQQQQ  2100
QQQPDQQQQP QMCPGAGTSG CLDDAPQQPS SQQEPYVPAA LQGPQGIASP FAAQYGFYGS  2160
ALQPLGLPVV SAAAAPGLGP GSGGSGALGP LGPFGGLLGG GCGGGGDGSA AGGNPTAFLP  2220
PPYGSPAGAD QGAALHQLYA QQQQQQQQLQ LQQLQQLHQV QAHYLLQQQL QQAQVSGTGA  2280
GVLGGQVPGG SSAVFGSGAL TGLAAVTAAP VPGPGPQPGA ALPSVQQPQQ MMAMETPLWG  2340
LSGDVPTPFT QPPAVNMAGG GGGAVPYPYG LQGASPWSLA AQASPALLPP LQSLEGAGAG  2400
YKQDASTSLP QQQQAAAEAA ALQQPTGLLD QPQVQVRRLS SDRGGGDPGP AVNRCELPLQ  2460
GLFSSGSHRG ASMGAGGGTG RQDLGGGAAA GAAAAGVGVG VLLSSSGSDC GVTAAAAAVG  2520
QPPDSLSSGS LEYQFPHLAQ LFQQQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5lxu_A	6e-22	1589	1645	1	57	Transcription factor LUX
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00056	PBM	Transfer from AT5G05090	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002948906.1	0.0	Myb-related transcription factor
TrEMBL	D8TR71	0.0	D8TR71_VOLCA; Myb-related transcription factor
STRING	XP_002948906.1	0.0	(Volvox carteri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP111	16	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05090.1	8e-26	G2-like family protein

Link Out ? help Back to Top
Phytozome	Vocar.0005s0508.1.p