PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0006s0301.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family MYB_related
Protein Properties Length: 3577aa    MW: 357162 Da    PI: 7.1144
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0006s0301.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.81.4e-144892147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         r rW ++E+ ++++a k++G   W++I +++g ++t+ q++s+ qky
  Vocar.0006s0301.1.p 48 RERWQEDEHARFIEALKLYGRQ-WRKIEEHVG-TKTAVQIRSHAQKY 92
                         78******************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.33E-134398IPR009057Homeodomain-like
PROSITE profilePS5129421.8674397IPR017930Myb domain
TIGRFAMsTIGR015573.1E-154695IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.604.4E-84696IPR009057Homeodomain-like
SMARTSM007174.0E-124795IPR001005SANT/Myb domain
PfamPF002493.1E-124892IPR001005SANT/Myb domain
CDDcd001679.33E-85093No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009845Biological Processseed germination
GO:0009909Biological Processregulation of flower development
GO:0010243Biological Processresponse to organonitrogen compound
GO:0042754Biological Processnegative regulation of circadian rhythm
GO:0043496Biological Processregulation of protein homodimerization activity
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 3577 aa     Download sequence    Send to blast
MAQPLLGPSG PERPSSPQPL QQAEVIPAQG AAEAPQKTRK QYTIVKRRER WQEDEHARFI  60
EALKLYGRQW RKIEEHVGTK TAVQIRSHAQ KYFNKIEKAG GSAEAIEVPP PRPKRKSMPA  120
QQRAGAAADT LPTLKFEDNA GSDGGYGPLL GSANGANTYD DDAPLAADLQ QLQLQPLSLP  180
AQAAAHQQQP MQLTQQQLQQ HQLQQQSPQQ GPGVKSYAPQ APPSFRVASS PAAAAAASPG  240
SSGLGLGLGL GLQAPQLPVS MAAAAAAAAA APLAVPPVST QTPATQPTAP QQQQQQQQQL  300
VLPNLLGFPG LGPAAQLQSA FPQPPGGSGA PSAGLTVAPA PAPAPALAPA PAPAPAPQQG  360
QLLGSSLADS IARNIAFNMA QWAQAQVRVA DAPGGLCLGT LGAQQADSSP DRQTVEAVAA  420
AAAAAAAAAA TAVISAAGEA IQQRIQEKAA AGFLPFLVHP LAELIPPPLV ASASAATTSD  480
QSPPLWALPP QQSLMHVLAA SSSGRGRGGG GGGVGRLVSR AHPHSQSQQF TATMLQRTSP  540
FSLDQGAPSG LGGLAGSDVQ THTHTHTHTR GEETTTGQFT GTPGSSQQQQ PAVSEPNQSP  600
QHISPRFAAA AAAAAAAAAA GATGSGSAGL GINSNSNSLM RLASLGPPAS ISLAGTMSLG  660
AGGQGVEQPQ QVLWEGSVPG SAAALSFPVG QAAQNLMRHG SMAVIWDEQQ QQQQQQEQAQ  720
AARDTAALGR LLAGAATFVD QQQQHHQNAA FSFETAQQAA AAAEGLRAAV AVAAIGGNAG  780
GLDASTVAAL SRFGSDTSQQ LQQQQPQRDQ DAAGGLAGLL QQQLLLMQQQ AAAGGPPPVL  840
RSTAPVGQPH QQQLQLTVAS RLAQGSVRGQ LPLPSKQQQQ QLQPSTEGTE TLSPAYQQLL  900
QPQQRLWVEV PRGLDADADA VALQGTPSDP SPASRPPPAA EQCPSPNPAL QQQQQQQQAV  960
ARFSAPAGAA AAVPRPGFAA ESELILNRQH MELEEEEVEE GRGRERARER RSSGRGQGRD  1020
RTSRSDPGGV CSDSAAGGGG GGEPVAAAPS CDKSSGASGC AAGGVDTYQD IEDGRPALQL  1080
LARGGGRQQH HGNPAADITP HFQRQRGSLA GAGAGAALPP RPAGESSPHV EGPEHAATAA  1140
SGDVEGDLLT GKDCLAMRQR LERPHAGDRE PRTGYRLQQR QQEHHRRYAV EREEAEEPEV  1200
LAGGQRHGQP HGASRTTRFK IHMQGPDGAL FDVTTSEKEL HRTHRRLHHH HHYHHHHRHQ  1260
QQTQHLQQQQ EQEQHPPGHR TTRESSQTRQ HQGFQGLVQE QEGEGHTRTH RTRRTAADLD  1320
GELGPTRDLS PHLSHHARGN NARDEAAEAG DGGSGGFGLH PPAANGRERP QQPAAQPPNG  1380
ARLKPHKKER LRPTAPQRPE ALDADAGTAA VATAAARAAA GGASGSWADD FGAATSGDGA  1440
YQLGQLQYLQ HQPGPGLSGT TGSGLNSLQE VLQGPNLEAM VPLLAPATAA AALQQGAALE  1500
QLARLQLNAE HQQHQQHQRR QQQQHQRLQQ QQEQQEHLHL QMPPQGLLLQ QRGGVDGEGA  1560
DVGGPAADAQ DGGSGGNGTD VNAYIRGDYS LMSPSGLQPP HSPSAPSSQQ LPGASGHRNT  1620
PQQQPQPQQQ RTQQPHPQPE QGASQQPQPH RQHRLWACNN NNNNNNQQQQ YSHQNQQLVS  1680
TGHQEMRSSD DRKEATGSGS QLQQPHHHRH HHHHHHNHHH HRHPQHAMQH EQQHSLAQGT  1740
QEEGSSQRSN RPAENRSGNA GGGDASAAAA AAAAGITADG GDAGDASGGA GSGAAGGAAE  1800
VPPAAAAVGA GVVAGTGTVT GTNTGSGSGA GSGAGGGAAD GHQSSGPTGL AVRAAAAHGG  1860
SCMPRQETPP AAVSAGTRQA PPQHQGSSAQ AGTGGTGTGT GGTMCMGMIG ALPPELGSGS  1920
GFGSAGAGGG GGGRQASVGP AGSGSSGADP DPDRKRWEQP GEALPGTSGI GSHVPLHGGL  1980
GPQQQQQHYQ HARARPGTTS VPMAAALKRP WHRAVRGEPA FTGHAAAGST DGEAPADGPD  2040
REEGQGRAAK ERGGAAGGDV HAVRHGDAAG ESVKEHRRGF SGGGGAVAGV IGGSSRHQVE  2100
LMRDAGGQPS CGRQLGAAAS GGAASGGGGG GGGGGGGAAS AGTRKRRSSG SGGAGGSGED  2160
IPAEQPLARQ RPMPMPALTH GLLQLQQAQQ QARAQLQQQH QAVLGAPSSA APPPAHRGGV  2220
DTLALLHSML VQQQQLQVVQ QQQQQQQQPG PSLMSTLAGL SAGAQAVANM LALQQQQQQQ  2280
QQQQQQQQQA HGEAPGQGQG QDVGPPRDVL LASPHQQGMA TITTSNDPLT SSALPAAADA  2340
AAAAAGGTGD GGAEGAADAG HGAPLPDRLQ MAALLSDGGS GGGGCGTSAD PAGGGGLAAL  2400
LPLLSDRERS IESEHIARLE EVARALRYAS SLAGPLAAVL QQPSLQKAFG AGVAAQEVTA  2460
AVNATALQAQ AGDSGNSLPC AAGGPAQPQP EQQQPPPPPQ QQQLQPSSHL AAGADGGGGG  2520
GTLSTAALLQ QWRNAAAAFS LQPLLHDPVP AATAAHTAAA AAAAAMGLGP SGLLPRGQAV  2580
AAGQQSGLSP TLLTYPTHPL LIQQQYMATA QGQADTAAAY LSGLGVGLRA LQPSTTQGLA  2640
VLAGLGGLGL CPSGSAGAGG LLSEQSPRPS LDAAPSAGQT AAAAAVAAPQ PGSQSGLAGP  2700
AAVAAGGRGG LSAGLQHQQQ LEALDGGAGP SGGPAAKPRD PRLNAGNPRT SAGGDGGGAG  2760
GGAGGGLFRH PTNPLTGTGD GAVGAAGPTK SFGRVDGGVS GGGRNNLGYV PESGGSGGDR  2820
AVGKVGQGAG GVVASGKRNV SELYGNHAAA AATAAGATQR VGAAAPRHKP SRRRHHRGHS  2880
PQRSVGSGAS SSGFHCGGDK SGGEEANHCP RPSREYCNKD GLAPGGGLGT EQQDTATSSG  2940
KDGEDGAGAG GVMAGGNSAG AGDAAGAAGA MPPSKLPRIG HEAPGKLQLH GGGGCGAAGA  3000
APLPVGRTAH GHHVPTEATP SSGGGSGGSG GGSIGGNKSG TSNDAYDGSM NASDEGSNEP  3060
GTAPADGPMG QPMAPSDGEG RLGMGRDGDA LNVQGMGGAG GGGMICGGAR SFSVAQPDPP  3120
SFGQAMATVQ GYMVAEHAGA AAVPSGVGHK RQRAEMQNGG GGGAAVTAAT AAMAAARQPD  3180
AGSGGGGAAG GGGGMLPQPP HKAPRTASSS GPHGPVPGAN PASAAAAGGA GLAQPCRGGG  3240
GGGDGSNADN GSHGATEGED GEVGGSGNRN RTPPGALREQ QSARAVGGTP PAQQQPAGSL  3300
PSHLAYILEQ GSSKQGGNDT GHNNSGTGPR SGVGSNEGGH GGNGGSRSNE GGNGNGSQGN  3360
GSHGNGQGSN GNGSHGHGSN GNNDNGSNGN GASTNLPGSG RHTYCRTQAG LAHRGGGTRL  3420
TGGGSGGSGG SGGSGGGGGA RALDGASGGG LLSPYDDTPV AGRTSQPPHH HHHHHHHHVD  3480
TALEGTSMRT QPPVPQGDMD PEPNQRLPQW QQQPQPQQPQ PQCGMQTGSA QAMEAILVNV  3540
GDGVWDAADV AGRRAPLGGA TACAGADVTG ALPEGF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
121422147TRKRRS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00103PBMTransfer from AT2G46830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP4541427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02840.31e-29LHY/CCA1-like 1