PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0006s0348.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family LSD
Protein Properties Length: 183aa    MW: 18940.6 Da    PI: 7.9546
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0006s0348.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD1361.1e-112245124
              zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdt 24
                         CggC+ lL YP GA++VRCa Cd 
  Vocar.0006s0348.1.p 22 CGGCQQLLIYPQGASNVRCARCDY 45
                         **********************96 PP
2zf-LSD146.18.1e-156286125
              zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                         C+gCr+lLsYPr+A sV+CalC+tV
  Vocar.0006s0348.1.p 62 CNGCRVLLSYPRNAQSVQCALCHTV 86
                         ************************9 PP
3zf-LSD141.91.6e-1397121125
              zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                          C+gC ++L+YP GA sV+C++C+tV
  Vocar.0006s0348.1.p  97 CNGCNIMLQYPVGAQSVKCSVCHTV 121
                          ************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010532.3E-111947IPR005735Zinc finger, LSD1-type
PfamPF069437.2E-122246IPR005735Zinc finger, LSD1-type
SuperFamilySSF486953.14E-536120IPR011031Multihaem cytochrome
Gene3DG3DSA:3.90.10.105.1E-436124No hitNo description
TIGRFAMsTIGR010533.3E-135989IPR005735Zinc finger, LSD1-type
PfamPF069432.5E-126286IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010532.1E-1295123IPR005735Zinc finger, LSD1-type
PfamPF069439.2E-1197121IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000303Biological Processresponse to superoxide
GO:0001666Biological Processresponse to hypoxia
GO:0002240Biological Processresponse to molecule of oomycetes origin
GO:0009626Biological Processplant-type hypersensitive response
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0010104Biological Processregulation of ethylene-activated signaling pathway
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010602Biological Processregulation of 1-aminocyclopropane-1-carboxylate metabolic process
GO:0010618Biological Processaerenchyma formation
GO:0043069Biological Processnegative regulation of programmed cell death
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MSMYQFPHNG AVPAPAQCHL VCGGCQQLLI YPQGASNVRC ARCDYITTAP AYTGANSAQI  60
VCNGCRVLLS YPRNAQSVQC ALCHTVTQVP VYVYLVCNGC NIMLQYPVGA QSVKCSVCHT  120
VTPVTAATAG AGPGGPTSAG PNGLQQPQRP KPTQTVVVEN PPSYDDKGNE VANIAVGVKA  180
DS*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002947922.11e-94zinc-finger LSD1 protein, partial
TrEMBLD8TNV73e-93D8TNV7_VOLCA; Zinc-finger LSD1 protein (Fragment)
STRINGXP_002947922.14e-94(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP46131111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.75e-28LSD family protein