PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vocar.0007s0275.1.p

Organism

Volvox carteri

Taxonomic ID

3067

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox

Family

C3H

Protein Properties

Length: 435aa MW: 47689.6 Da PI: 4.4861

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vocar.0007s0275.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.6	3.4e-06	90	114	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +k + C f+r +C G++CkF+H+ Vocar.0007s0275.1.p 90 PKSVVCE-FFRHNQCTKGNKCKFSHD 114 5778899.8898*************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	8.9E-6	89	114	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.9E-5	89	115	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.563	89	116	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.2E-4	91	115	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.375	169	206	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.36	169	205	IPR000571	Zinc finger, CCCH-type
Pfam	PF16543	6.6E-13	230	309	IPR032378	ZC3H15/TMA46 family, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence Send to blast
MPPKKGGAVD KAKAAAKQKA AEDKTFGLKN KNKSAKVQKF VQNVKQNATQ GLANYKPVEV 60 KKKEKKPEDE VGNIFAVAIK QPKVPEGVDP KSVVCEFFRH NQCTKGNKCK FSHDLSVERK 120 GPKISLYTDQ RDVGKGPGDD EQEGKEGMDD WDQATLEAAV KQKHANENKP TEIICKFFLD 180 AVERKLYGWF WKCPNGDDCK YRHALPAGYL LKSQMKELLE EEARNAKDIA ESIEEERAKV 240 EARTPVTEET FRAWHRAKRD ARAAKRAAEE EERRRKGILN GREIFMQEGF VAADDASAAD 300 DYAREEDEEN AIKDMLVRAQ AAAEAARQAV TEMGPTPEEE EAAAEGMCTG PSGSGAGPSG 360 SQGTGPSTHL NLDDGEAEAL FEGDDDEEVM DDDDEEVMDD DDEEEDDDGD LDELEAHVKG 420 LHVEGGAAAG GQDG*

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence Send to blast

MPPKKGGAVD KAKAAAKQKA AEDKTFGLKN KNKSAKVQKF VQNVKQNATQ GLANYKPVEV  60
KKKEKKPEDE VGNIFAVAIK QPKVPEGVDP KSVVCEFFRH NQCTKGNKCK FSHDLSVERK  120
GPKISLYTDQ RDVGKGPGDD EQEGKEGMDD WDQATLEAAV KQKHANENKP TEIICKFFLD  180
AVERKLYGWF WKCPNGDDCK YRHALPAGYL LKSQMKELLE EEARNAKDIA ESIEEERAKV  240
EARTPVTEET FRAWHRAKRD ARAAKRAAEE EERRRKGILN GREIFMQEGF VAADDASAAD  300
DYAREEDEEN AIKDMLVRAQ AAAEAARQAV TEMGPTPEEE EAAAEGMCTG PSGSGAGPSG  360
SQGTGPSTHL NLDDGEAEAL FEGDDDEEVM DDDDEEVMDD DDEEEDDDGD LDELEAHVKG  420
LHVEGGAAAG GQDG*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002956380.1	0.0	hypothetical protein VOLCADRAFT_107216
Swissprot	Q0JHZ2	5e-99	C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11
TrEMBL	D8UCN4	0.0	D8UCN4_VOLCA; Uncharacterized protein
STRING	XP_002956380.1	0.0	(Volvox carteri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP3267	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20280.1	5e-79	C3H family protein

Link Out ? help Back to Top
Phytozome	Vocar.0007s0275.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]