PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0008s0156.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family G2-like
Protein Properties Length: 513aa    MW: 51494.5 Da    PI: 9.1878
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0008s0156.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like86.42.8e-27364417155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          +prl+Wtp+LH++F +av++L G+ekA+Pk+i++ m+++gLt+e+v+SHLQkYR+
  Vocar.0008s0156.1.p 364 RPRLVWTPQLHKKFESAVQKL-GTEKAVPKNIMQEMNIDGLTRENVASHLQKYRM 417
                          59*******************.9*******************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.078361420IPR017930Myb domain
SuperFamilySSF466897.17E-18362420IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-26363420IPR009057Homeodomain-like
TIGRFAMsTIGR015574.9E-23365417IPR006447Myb domain, plants
PfamPF002491.9E-9367416IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MAYDAVQALQ GFYGIKEDVA LDPAAGLVPL TTSLISPLVA QAFGLPTLGS ASIAQPQPTL  60
APPTHHAQNV YGSMVNPAVM GAFGFGGAQF TTAIQQPSPL AGLPIGYLQA LAAASQHHHH  120
QQQQQQQQST AALLAQTAGA LHAHTAALAA ASRAAPATSS AVSIPLMPAA SQDGLARRPS  180
SSEQQDRLTT NATATASSGP KPNLGAAIRP VASVPFPNPL MMQNLYSAFT QPHSAYGQNS  240
GFAAAVAPYA VHSAYYARPP DANAAAVAAA AAAAAAATGA YGYPQAPSTV PYGGAYHPGY  300
GAAAPLDYSA AAAAAAAAAA YRPVAAAAAL MNPSSVPSSS LQPSQSLGEQ EEYADDGSTR  360
AIKRPRLVWT PQLHKKFESA VQKLGTEKAV PKNIMQEMNI DGLTRENVAS HLQKYRMLRR  420
KDATSSEGRD SDSRTVGTKR SEPESGRPAP AATTLTQTTA TSLHGGDSGG GGGGGGGAMS  480
AMTGPMGTGG GGGSSTAVVP ALSSGTAMVV AA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A3e-22364417154Transcription factor LUX
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB1B5J33e-71B1B5J3_CHLRE; RHYTHM OF CHLOROPLAST 15
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1111645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46640.35e-25G2-like family protein