PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0009s0293.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family AP2
Protein Properties Length: 1256aa    MW: 130813 Da    PI: 7.6081
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0009s0293.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.93.4e-101664255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          +kGV+ +k++ +W+A+I +       +++ lg + t+eeAa+  ++a  +++g
  Vocar.0009s0293.1.p 16 LFKGVTLYKRTSKWRAQISHG-----GRTVTLGDYNTEEEAARVFDRACICKYG 64
                         69****************993.....4****************99999877765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.44E-121572No hitNo description
SuperFamilySSF541712.75E-121573IPR016177DNA-binding domain
PROSITE profilePS5103212.9321672IPR001471AP2/ERF domain
PfamPF008472.0E-61662IPR001471AP2/ERF domain
SMARTSM003801.5E-121678IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.9E-101773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1256 aa     Download sequence    Send to blast
MEALALVAKA SSRHSLFKGV TLYKRTSKWR AQISHGGRTV TLGDYNTEEE AARVFDRACI  60
CKYGKDAVCN FPLEDYMSEW EELWATTIPA LLIKFKEERQ RCKAARGPGG VRAGAQNQAS  120
QPRPSQELVV DGDQAQSPRP PSSFFVPRIK PATFASNRKA QPRPPPASSL PPKPTVAAAA  180
AAAAAAAAAS PFRTDNAFKD ELHAGLYSFL KAAGQAALGQ QFEQDRIRPE VVAALEGSST  240
TGRHGRGLDF QSAYFPGTAY AHPGPSGQLC AGNPVGGPLN QIQIQIQNFN DHRRTHAEQL  300
KMEMEPSENI ERATSDDGDG DGAHHLEPTP ATSSPAAVRR RATASRPAAT GTAGGGGGGG  360
SPPDVLSPAS SSPNRDRLAS LLWRVRSVPC PQAATEWPIP EAAAAAAAAP PDELVTVFTG  420
ADGASRREGL AAATRPPPSM PLLNFPPPMR LHGSNYVPSW RRASVCSGRM GIEGGEFDGE  480
SVWKGHSEVF LSGSGTAAGD ADATAAQQRR VVHSPVAQPS VPQPPSYPDN FRAQQHGSDG  540
GALDEMPYMV DYTSGRVVLP TRLGFPTLPL LNLPAPRTLT AKRTVREEMA VVAAAEVETD  600
DVGGTGFAAA APQSPVASTH AVPSGFRALG TPLQELGLDP SHAAVPRGMV VRRVHYSTSP  660
WPPAKRLRLA AIAAAAAPPP PPAPQTDEEP MGVVMTTTDT AAGEGEEEEE EVDRNARFAK  720
SSGSDGAGRA AECRSAVVRR WRCGPPSGES AAAMARFTAA AGERGTAVAA AASRPPMTTT  780
RDGVSREGSC RQRPPEPEPH TSPVPAACAP SSAAVTLQPG ATCASPVAAP PAAAATAAAA  840
TAAAAAVEGL SMEELHELLL AALSRREEDL VQQKSLARMR QQQQYRRQQQ QQQQQDVLLR  900
LAEAFALRTG VLTEATRPQG IIEEPAAAAA GGGDTDAMWY GDCSEGGRAT AAAGGIQLRK  960
RRCADDDDVG GVIAVNDMLY DRPASPVPLL ATKVPRPLTL QSLPSLPPPP AQQQQQQQWQ  1020
QQEHKSSGGG AAVAPPPPHR QECTAVSADS PASSSSGGGS IIRDVRFLAD TPAPAAAASA  1080
PAAAARRGHQ HLPSANAPPR LSLQTSHPGG SKETEALKNP SSQATRGSSG GGSIDRTPSH  1140
VSPLVVAPAA AAAAAAVNGG DAAAAGGSMF INQAPGQKWR LPASLHDWEH TLHERPRAPA  1200
VRLTLCRNDE YDSYSVGGSV GGGSNRGADA SLSIEVPLVL RVPANLQQQI LSMLK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1349360TGTAGGGGGGGS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002947606.10.0hypothetical protein VOLCADRAFT_87913
TrEMBLD8TMK40.0D8TMK4_VOLCA; Uncharacterized protein
STRINGXP_002947606.10.0(Volvox carteri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G39250.11e-09AP2 family protein