PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vocar.0009s0375.1.p

Organism

Volvox carteri

Taxonomic ID

3067

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox

Family

GATA

Protein Properties

Length: 1064aa MW: 104642 Da PI: 8.0736

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vocar.0009s0375.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	45.9	7.6e-15	557	589	1	33
GATA 1 CsnCgttkTplWRrgp.dgnktLCnaCGlyyrkk 33 C nCgt++Tp WR+++ dg + LCnaCGly+ k+ Vocar.0009s0375.1.p 557 CKNCGTKSTPFWRKDKnDGRP-LCNACGLYFSKN 589 **************78888.*******996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57716	1.19E-12	550	600	No hit	No description
PROSITE profile	PS50114	16.83	551	594	IPR000679	Zinc finger, GATA-type
SMART	SM00401	1.6E-11	551	602	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	3.2E-18	553	601	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	7.11E-15	556	602	No hit	No description
Pfam	PF00320	2.3E-11	557	589	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	557	582	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1064 aa Download sequence Send to blast
MSMAMAMGMP PGFLGMGGLG QMQMPGMAAM GAASYPYMSG LMPVFTAMAG PQQMAAMAAG 60 AMPVPGAADI AGMPGTAGGG GGGDATVVIG TPLADVAQQW QLARQQQATM SAYFQMWAMA 120 AASWYGSMGL MGGTAAGGDA AATAAAAMSM MGMMNPAMMG MSMNPAQMQA MMAQSWAMQM 180 GAMGMMPGMA SAMGGAMGLP GAAAGGPGAA AAAAAAQSAQ WMQQAQALQS AFWGAVPHGG 240 MTAGAMAGSP MAAMAGIGGT MGGYGYPGGA AAGGVVVGGI GGPDGGGGMG AAMLRSLGLS 300 MPTNSDEAFP EPEEEPEEEE EEQNTEEEED GDESPSHQAF MQHHHHQQQQ EHIQALPPLL 360 PQQPQPHALA HQAQVPMSFP VNQVGLGAGA GHAGGPQSQA GLGHVQGSQL TQAAPGTAPQ 420 PSPTLPAAQP HHAQPLSSLP KPPQQQQQQQ QQHQGDVPMP GCAPPAQPVP PGPIGVPQAP 480 PPHMSAAAAA ALSAAANVVA AAAAAKRPLE HSVPMSAANN FAAAAAAAAN SQSYLSGQSK 540 RGRRTAKEQK GTDSKVCKNC GTKSTPFWRK DKNDGRPLCN ACGLYFSKND APRPKILWKQ 600 DEQGGAVGQA AAAVAASAGG VLQGNPLVAA AAGDPTAAAA LAAAMAAGRG LTLPAGAANA 660 ISSLPGLAAA AAAAAAASAA STAAGTAAAM AGARPAGAAP LAAGAVAPPA RPGLGATGAG 720 TGGHALGPAA AAGAAAAAPG AVRPMLPTSL PGSAHINAAQ MMAAAAAAAA AAAAASKGVV 780 GANGQPGGPR PGMQIPGMPN LQMTPGAAAA ALAAAAAAMA AFPQASLQAR PPLQVQVPGS 840 GSAAAGGRRH GRAASGLPAS GAGCSGACSG CRGCSCGGRC CTGWWYGDGS RPNQHRSRGA 900 DGGGGPGSGA LDCLSGWWHI TRICGIAGWS GGCDIRAASS SGGCGCVWIK VVSYGVLLAV 960 VAPCMYACIC VRHKAVGGGA FCVLYLILRG DFDCVPLFER PWFANDYEHT LGLRRKRRQL 1020 SVHYHVPARD DSSARNYAPG MLTYAFGARV LMHCQPFQLF VIG*

Sequence ? help Back to Top

Protein Sequence Length: 1064 aa Download sequence Send to blast

MSMAMAMGMP PGFLGMGGLG QMQMPGMAAM GAASYPYMSG LMPVFTAMAG PQQMAAMAAG  60
AMPVPGAADI AGMPGTAGGG GGGDATVVIG TPLADVAQQW QLARQQQATM SAYFQMWAMA  120
AASWYGSMGL MGGTAAGGDA AATAAAAMSM MGMMNPAMMG MSMNPAQMQA MMAQSWAMQM  180
GAMGMMPGMA SAMGGAMGLP GAAAGGPGAA AAAAAAQSAQ WMQQAQALQS AFWGAVPHGG  240
MTAGAMAGSP MAAMAGIGGT MGGYGYPGGA AAGGVVVGGI GGPDGGGGMG AAMLRSLGLS  300
MPTNSDEAFP EPEEEPEEEE EEQNTEEEED GDESPSHQAF MQHHHHQQQQ EHIQALPPLL  360
PQQPQPHALA HQAQVPMSFP VNQVGLGAGA GHAGGPQSQA GLGHVQGSQL TQAAPGTAPQ  420
PSPTLPAAQP HHAQPLSSLP KPPQQQQQQQ QQHQGDVPMP GCAPPAQPVP PGPIGVPQAP  480
PPHMSAAAAA ALSAAANVVA AAAAAKRPLE HSVPMSAANN FAAAAAAAAN SQSYLSGQSK  540
RGRRTAKEQK GTDSKVCKNC GTKSTPFWRK DKNDGRPLCN ACGLYFSKND APRPKILWKQ  600
DEQGGAVGQA AAAVAASAGG VLQGNPLVAA AAGDPTAAAA LAAAMAAGRG LTLPAGAANA  660
ISSLPGLAAA AAAAAAASAA STAAGTAAAM AGARPAGAAP LAAGAVAPPA RPGLGATGAG  720
TGGHALGPAA AAGAAAAAPG AVRPMLPTSL PGSAHINAAQ MMAAAAAAAA AAAAASKGVV  780
GANGQPGGPR PGMQIPGMPN LQMTPGAAAA ALAAAAAAMA AFPQASLQAR PPLQVQVPGS  840
GSAAAGGRRH GRAASGLPAS GAGCSGACSG CRGCSCGGRC CTGWWYGDGS RPNQHRSRGA  900
DGGGGPGSGA LDCLSGWWHI TRICGIAGWS GGCDIRAASS SGGCGCVWIK VVSYGVLLAV  960
VAPCMYACIC VRHKAVGGGA FCVLYLILRG DFDCVPLFER PWFANDYEHT LGLRRKRRQL  1020
SVHYHVPARD DSSARNYAPG MLTYAFGARV LMHCQPFQLF VIG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002957030.1	0.0	hypothetical protein VOLCADRAFT_119580
TrEMBL	D8UEE8	0.0	D8UEE8_VOLCA; Uncharacterized protein
STRING	XP_002957030.1	0.0	(Volvox carteri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP4198	11	11

Link Out ? help Back to Top
Phytozome	Vocar.0009s0375.1.p