PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vocar.0011s0039.1.p

Organism

Volvox carteri

Taxonomic ID

3067

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox

Family

MYB_related

Protein Properties

Length: 619aa MW: 60958.4 Da PI: 7.412

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vocar.0011s0039.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	37.3	6.5e-12	50	94	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT eE+ lv+a+ lG+ W +Ia++++ gRt+ ++k+ w++ Vocar.0011s0039.1.p 50 RPKWTREEEMVLVEAHCTLGNA-WVAIAECLP-GRTPSEVKNIWHST 94 789*****************.*****.*******99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.235	45	99	IPR017930	Myb domain
SuperFamily	SSF46689	3.96E-12	48	96	IPR009057	Homeodomain-like
SMART	SM00717	1.3E-9	49	97	IPR001005	SANT/Myb domain
Pfam	PF00249	8.1E-10	50	93	IPR001005	SANT/Myb domain
CDD	cd00167	3.96E-8	52	95	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.2E-14	52	96	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 619 aa Download sequence Send to blast
MTLPSDSREL SSASELEEAS KVPSVHGDGS ISLTDDEGWP TCSSRSRCRR PKWTREEEMV 60 LVEAHCTLGN AWVAIAECLP GRTPSEVKNI WHSTLRARKL ETRSMLRAYV TALKDRADKP 120 AARQQAMRAA QTCLSETAGG DVFPPGKRTH KRSAAQQQQQ HQPSQVRTRD TCGPPPPATA 180 STSAPAAGAG AGAGAGPKPT EQDDAGAAGT QALRRPSAGA GADAAAFTSV AAFTLSAGAT 240 PTADTRAAAA AAAGAAAAAA PTSGHRSSLG SEWSTVSSGA QEPCHPSAGG HSATATATVH 300 LPSGPSSGDF TTATATPPQV LSFSPTVSPA SSIYALQLPV PSPAAAAANP SGHRASAGAL 360 VTLSTTGGRV GSPAVQHSHS PAAAASAAAN FKATLPHSLA AITSGSGSAA AVSTATCGGG 420 SGGGEAASSP GWLVPYVTST LADATDSQLV MRQQQATAPH GWGQGHGLAC SSATQMTWEP 480 GSVTPATPPG VAAHAADSCS GSGGDTRSLW AGVSGRALMS PTGAHPGTQA APLAVASSGA 540 TIAASGCPAA SKQPFAVSTE HTTAMSGSQF RGAVPIPFSG LGNGPAATNS GSDGAGIGIV 600 TMGLYGIMDE ELLACIGA*

Sequence ? help Back to Top

Protein Sequence Length: 619 aa Download sequence Send to blast

MTLPSDSREL SSASELEEAS KVPSVHGDGS ISLTDDEGWP TCSSRSRCRR PKWTREEEMV  60
LVEAHCTLGN AWVAIAECLP GRTPSEVKNI WHSTLRARKL ETRSMLRAYV TALKDRADKP  120
AARQQAMRAA QTCLSETAGG DVFPPGKRTH KRSAAQQQQQ HQPSQVRTRD TCGPPPPATA  180
STSAPAAGAG AGAGAGPKPT EQDDAGAAGT QALRRPSAGA GADAAAFTSV AAFTLSAGAT  240
PTADTRAAAA AAAGAAAAAA PTSGHRSSLG SEWSTVSSGA QEPCHPSAGG HSATATATVH  300
LPSGPSSGDF TTATATPPQV LSFSPTVSPA SSIYALQLPV PSPAAAAANP SGHRASAGAL  360
VTLSTTGGRV GSPAVQHSHS PAAAASAAAN FKATLPHSLA AITSGSGSAA AVSTATCGGG  420
SGGGEAASSP GWLVPYVTST LADATDSQLV MRQQQATAPH GWGQGHGLAC SSATQMTWEP  480
GSVTPATPPG VAAHAADSCS GSGGDTRSLW AGVSGRALMS PTGAHPGTQA APLAVASSGA  540
TIAASGCPAA SKQPFAVSTE HTTAMSGSQF RGAVPIPFSG LGNGPAATNS GSDGAGIGIV  600
TMGLYGIMDE ELLACIGA*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002950260.1	0.0	hypothetical protein VOLCADRAFT_104639
TrEMBL	D8TVH6	0.0	D8TVH6_VOLCA; Uncharacterized protein
STRING	XP_002950260.1	0.0	(Volvox carteri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP7765	2	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23250.2	9e-12	myb domain protein 15

Link Out ? help Back to Top
Phytozome	Vocar.0011s0039.1.p