PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0011s0281.2.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family MYB_related
Protein Properties Length: 390aa    MW: 40616.1 Da    PI: 7.0784
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0011s0281.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.22.5e-1560105247
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          ++WT+eE++ ++++ ++lG+g+W++Ia+ +   Rt+ q+ s+ qk+
  Vocar.0011s0281.2.p  60 QPWTEEEHLAFLEGLRKLGKGNWRAIAKSFVPSRTPTQVASHAQKH 105
                          79****************************99************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512941954110IPR017930Myb domain
SuperFamilySSF466893.01E-1556109IPR009057Homeodomain-like
SMARTSM007171.8E-1258108IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-1358105IPR009057Homeodomain-like
TIGRFAMsTIGR015573.3E-1459108IPR006447Myb domain, plants
PfamPF002493.9E-1360105IPR001005SANT/Myb domain
CDDcd001671.20E-1161106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MSPPAASLSS HLELACERDR FAAASILLSM SHEEPPQPDV ETSDEQHNSS DAANANRKGQ  60
PWTEEEHLAF LEGLRKLGKG NWRAIAKSFV PSRTPTQVAS HAQKHFMRIA GATKRKSRFT  120
AWEVEVGVPA KTVQAGDSPQ LPQENAQCPQ QPAKLQASSY QGMVAPFPAM PFPFMHPMMF  180
GFPAPFFPPF LCPPPAFAAS ALSAMQKQGS MPMLLPPMFP MAAAMMAMNP FCMAQQMTAA  240
AQAAVANTAA VVHAATSCGC TTAGTGPTAT TDTANSDDVP RRTLPAPPGS PPICKPEALH  300
ARPSAAAAAS GAAAVLQCRV PGNVQSRITA SGGPGEGTLP RAPVSGSLVD NDPLQLLAAA  360
AARPDDGVGA FHTSSHSAFR PPQEAEAES*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2J7ZUN95e-50A0A2J7ZUN9_9CHLO; Transcription factor DIVARICATA (Fragment)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.11e-25MYB_related family protein