PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vocar.0012s0086.1.p

Organism

Volvox carteri

Taxonomic ID

3067

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox

Family

C3H

Protein Properties

Length: 1266aa MW: 130037 Da PI: 6.0719

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vocar.0012s0086.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.7	6.2e-06	1075	1096	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +C+f++ G C G+ C FaH+ Vocar.0012s0086.1.p 1075 TECKFWRL-GRCAKGADCAFAHV 1096 58****.***********5 PP
2	zf-CCCH	23.2	1.2e-07	1105	1126	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +Crf+++ G C++G+ C+F+H+p Vocar.0012s0086.1.p 1105 PCRFWRQ-GRCQRGEVCSFSHDP 1126 7****.***********86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	12.615	1071	1098	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	7.8E-4	1071	1097	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.7E-4	1101	1126	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.44E-5	1104	1125	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.3E-4	1105	1126	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.342	1105	1127	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.8E-4	1105	1126	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1266 aa Download sequence Send to blast
MTLLSWNEAV ALCRQSVEAP CTEEHAGRAI GTGSKTHQRP CLPAVVLPSQ AARRLLRHLL 60 STQHGITHHH SGPSLLQPAG SCEFPPHEAQ PDASQGVRHA VLDATAATAR PRYVNPGPPG 120 RPPNPLQPSA NGAPEAYPVA QSTARGSPHF RVPPRKAEGY AGDGTAGTAS PAAPTPPDPA 180 HPPASMQPVA LPPLPTQTAR LGTNPPAASP SVSPSTLIPT VAAAAAAAIM RPPPPPPPPS 240 EAPGRVPPPA SAPRPRPKNE LRHLQQLNHR ARKRRQQQED HGGGQDGAGQ RRPAAKRRKA 300 AAGAGAGGAA SRPPTKSPAE EEEEEEEDGE EEDGDAGRAA EVLVGDDGVQ GVGIGGGERE 360 DGAGAAGAGS GGGGSGGGGL STGRADHAGA AEITPPIRDS SALRPSRMRQ QLKQVQHQRH 420 QEHQEQERMQ QRPQEQVQQQ HEERQQQQQQ QVEEEAVEEE RQLVPIIQVR RNRNLSGLAS 480 VGVASLVQLA VKRPKGHGSG GAAKPGSAAV AAAAALDSEA QAKGIEEEEE QEGAARVLAP 540 WLGSGFLGHG ALPASQPRPS EDVWAADVMA GLSAPDDVRG AASRTVAVAS GAIGPEVAAA 600 VASVPAGSAR PRGPLPAAAT VAAVRAAAAA AAPPPLPSGA AGMQAPAAVA VTTGGGTYGG 660 TGAGADWLTW AAEEDEGGPC GRTDPAVDLA TGAVHNHIPH VASSDAAAVA TAPVASRALR 720 GSEGTDGGAA PPQSQELALA AASAPTSASH LDSAVAPGGG GGGDDVKLVS STSTFAVAGG 780 VNETKAQFGA SAVPSSVRGS SWLHQQLGDP VSVPLKGQQP TQLKKEQEQQ QQMQLQWRQQ 840 VGDEEMAWAT GLPPPRPAEG IHLEESIAEE MKEEEMQSKG LYSQDDDDDD DDDDDDDDND 900 DGDDEEEGYY ATIAQWAPSL AYHPADVGGG MDRDAEEVGR GGRSRGPGRS GRQPRGRDRG 960 AQGDGVQGKQ QQQKQQQQQK KKDRKQQQQQ QTQRLSGRKR GAAGQISAAV TGGTAGAAMA 1020 PGTAAVTAAA TAGGTEVGLY ADVKAFQRQQ RKARFLNGGA GPESTRPVPE IRGPTECKFW 1080 RLGRCAKGAD CAFAHVGRPV TRLLPCRFWR QGRCQRGEVC SFSHDPQLPE PCGGLLENGA 1140 CPDPEHCRLG HYTPEDMDNL REYFRDVAAR AATAAAAAAA APGAAGGVAS GAHGHGAPKL 1200 EPSDSTAAQQ GSMALPVGAP AVPMGGWGPQ PAAGPAPAAG MLPVPYLRPM QPVLQRMVNG 1260 GDEDF*

Sequence ? help Back to Top

Protein Sequence Length: 1266 aa Download sequence Send to blast

MTLLSWNEAV ALCRQSVEAP CTEEHAGRAI GTGSKTHQRP CLPAVVLPSQ AARRLLRHLL  60
STQHGITHHH SGPSLLQPAG SCEFPPHEAQ PDASQGVRHA VLDATAATAR PRYVNPGPPG  120
RPPNPLQPSA NGAPEAYPVA QSTARGSPHF RVPPRKAEGY AGDGTAGTAS PAAPTPPDPA  180
HPPASMQPVA LPPLPTQTAR LGTNPPAASP SVSPSTLIPT VAAAAAAAIM RPPPPPPPPS  240
EAPGRVPPPA SAPRPRPKNE LRHLQQLNHR ARKRRQQQED HGGGQDGAGQ RRPAAKRRKA  300
AAGAGAGGAA SRPPTKSPAE EEEEEEEDGE EEDGDAGRAA EVLVGDDGVQ GVGIGGGERE  360
DGAGAAGAGS GGGGSGGGGL STGRADHAGA AEITPPIRDS SALRPSRMRQ QLKQVQHQRH  420
QEHQEQERMQ QRPQEQVQQQ HEERQQQQQQ QVEEEAVEEE RQLVPIIQVR RNRNLSGLAS  480
VGVASLVQLA VKRPKGHGSG GAAKPGSAAV AAAAALDSEA QAKGIEEEEE QEGAARVLAP  540
WLGSGFLGHG ALPASQPRPS EDVWAADVMA GLSAPDDVRG AASRTVAVAS GAIGPEVAAA  600
VASVPAGSAR PRGPLPAAAT VAAVRAAAAA AAPPPLPSGA AGMQAPAAVA VTTGGGTYGG  660
TGAGADWLTW AAEEDEGGPC GRTDPAVDLA TGAVHNHIPH VASSDAAAVA TAPVASRALR  720
GSEGTDGGAA PPQSQELALA AASAPTSASH LDSAVAPGGG GGGDDVKLVS STSTFAVAGG  780
VNETKAQFGA SAVPSSVRGS SWLHQQLGDP VSVPLKGQQP TQLKKEQEQQ QQMQLQWRQQ  840
VGDEEMAWAT GLPPPRPAEG IHLEESIAEE MKEEEMQSKG LYSQDDDDDD DDDDDDDDND  900
DGDDEEEGYY ATIAQWAPSL AYHPADVGGG MDRDAEEVGR GGRSRGPGRS GRQPRGRDRG  960
AQGDGVQGKQ QQQKQQQQQK KKDRKQQQQQ QTQRLSGRKR GAAGQISAAV TGGTAGAAMA  1020
PGTAAVTAAA TAGGTEVGLY ADVKAFQRQQ RKARFLNGGA GPESTRPVPE IRGPTECKFW  1080
RLGRCAKGAD CAFAHVGRPV TRLLPCRFWR QGRCQRGEVC SFSHDPQLPE PCGGLLENGA  1140
CPDPEHCRLG HYTPEDMDNL REYFRDVAAR AATAAAAAAA APGAAGGVAS GAHGHGAPKL  1200
EPSDSTAAQQ GSMALPVGAP AVPMGGWGPQ PAAGPAPAAG MLPVPYLRPM QPVLQRMVNG  1260
GDEDF*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002950536.1	0.0	hypothetical protein VOLCADRAFT_91027
TrEMBL	D8TVZ8	0.0	D8TVZ8_VOLCA; Uncharacterized protein
STRING	XP_002950536.1	0.0	(Volvox carteri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP11352	3	3

Link Out ? help Back to Top
Phytozome	Vocar.0012s0086.1.p