PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vocar.0013s0255.1.p

Organism

Volvox carteri

Taxonomic ID

3067

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox

Family

SBP

Protein Properties

Length: 2140aa MW: 216550 Da PI: 6.8559

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vocar.0013s0255.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	82.1	7.7e-26	43	116	1	74
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT------- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrr 74 +C+v gC++dl++a + h+r+++C+ h kapv+lv+g+ rfCqqCsrfh l+ef + r+Cr L k +r+r Vocar.0013s0255.1.p 43 RCKVSGCTSDLTSAPKTHQRFRLCNLHIKAPVILVDGVASRFCQQCSRFHPLKEFHGSNRTCRMMLIKNRARQR 116 6*****************************************************************99877776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.2E-25	38	105	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	22.734	41	118	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	9.16E-24	42	117	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.9E-25	44	116	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 2140 aa Download sequence Send to blast
MEAEQGESQD YEAAEGLPVI WTKHEGTCID SMLGCRRGSA PLRCKVSGCT SDLTSAPKTH 60 QRFRLCNLHI KAPVILVDGV ASRFCQQCSR FHPLKEFHGS NRTCRMMLIK NRARQRGMGT 120 ACTSSLYDSS TAVISAIRKR SLPLVTLPPV LKPAPAAPAP AAVTAAAVAA ATRTAATAME 180 VGPATATATA TTDSSWISTH AAARHFARPS PASETPPDAA VAVTPVAQLA KPVSEPLSHA 240 PAAVSKKTAT FEPSNRAAVA AAALAPAAVV ALAAAAMPHC ACVVSDATSH PLPQTPSWGA 300 LGAHSTAAGG GEDAPAASTA LTATAAGGGM GAVWGGQIHV TADGGAAAAA AGSTAVMAAS 360 PATASCISCS SSSVGAQASA SAAAPLPCRP PAWATSAEGP AAAAVPAASR LSPFARCSAP 420 SVLCQPNGAS GIAWAVAPPS AAISPFLAAA LRNRCNGGHS EWLLAGDQLP LQEQQQEQQQ 480 QQQQQQRNML QMLQGRKFMK YGGTAAVVHQ PYLCYEPSLQ RILQSRQASL PRGASSVGSG 540 GGGGDSGSGG GGDSSSGGGG GPDGVDGDGG GLPRDCDGGW WGTDDGPTDE GFKRSGGYSG 600 GSGGGVNAAA AAACPLFSRM SAPPPQEVAS QHQLSAELRC NSTGSIFYRR SAAAAAAGPS 660 VLGAGPRATG GGGSFTGLQS VGSFGSFKRR RSFVFEDAAA ATGGDDDGAA ASVRHCSSAG 720 PTEPALDAAV AKAVAGAAAA GTTLLPSPFS HGGGLQLQGS LDHHHYYQQQ QQQLWQQRQL 780 CHLRQRDNLG GQSSAHDARG ASEDRPGSPI GVVRRDFGLV SEDVGSDGGG PAGMVEDGDI 840 GSGGGEKPLQ ASPMGQRQLA LAQGEGSSIG RRSSLAVATA ASSPSAAAEL FTTCALLPSP 900 FSTATARTAA TAACGGVGRD SAPLTPRGAT MLVLGALVLD EKAERRGFDS TKGTAAAAAA 960 AATATFATTA AAAGPEGTAG DANAADGGAA KADAVSAASQ GDSILIAKLA AEWGSEGKPD 1020 SGDDDDDIRV LLGGVLEEVE GLTRHHRDAD VAVVPWTTAT MTPAVPLRPP PPPQPSAQTE 1080 PQVTLLLPPL LPSLITADAA TANRSSPGVY GAPSTSSLAA VAPGKIAVTA VAPPGPFTRS 1140 STVAGWVPSS RGGVQGAHAA AIVADAAAAG ALAARSPTTG EELVTAAAGS MPLLLQPSPP 1200 LLQLQIGGGG AAAGAGGSHP DSFQQLLPMW VRSAQSEPMW STRSGSTVCR QQQQQQPSAH 1260 IQEQLVQLQL QLQLQQQQML IQQQSILIQQ QQQQQQQQQG QQQQQQGQQQ QGQQQQQLTL 1320 TSTQQETCAA AGAAPALVTA AAAAGAPKGA AVRVPGAEST AAATGDVPAA NPIAAVGAVA 1380 QSRRQRCVRE RERQRDPAVA AVAVGKSSLE SSPGSGSSTA TRSIRKKAVG EETEEQLQLL 1440 LGDLIGGCST KPAASPPPLP ASATIAMTPQ VPGQQLLQPG SSAATGGGGA AAVTAAQQVV 1500 EQQGTIMRQR PAAAAAAGAG ADNGSWPAVK GPGGGAASTC YPLSSYHLTA AATAASASPL 1560 RRGEEEGDGA GGSGCGGGGG EGEPRTWQQQ QQQVQQLQLP KDYAVASAWT PSAVHVVVPA 1620 AAEDGAEGPL LPGGQQVPQL QLQQKQQVEQ QHLQCLPQQK EQQLMMQQQQ QQQPPGWAGL 1680 PCLGVGHQAP GAAVAAAPTT SPFPQLATAS SCTCTLTSDV VPTTATAMAI TTDTTMNTLA 1740 VAAAATASAA TPTEVAVVSR TSNATLPEVA ASTNNAALQP LPQQHQQQLH ALQQQQEQPP 1800 PQPQPQPQQM QTSSFVAGHR PTSDADPSMS HNSCRTFPYT SPPELPSSSA GGSPAGAGVA 1860 AAASQLPVGG ASLPDGDFLD MALLQQRRLW GELRLMHEHQ VALMQQQMEQ QEVLARLLGL 1920 TKASSGGGGS GGEASSLLAQ LNCGSGGGGS GGGSGGGGSG GDNNNNRSSC CVLSGDLNGS 1980 MQPEFGRWSM PASLTMRGVG VGGTDDSLSL AVLQPPPPPP PQQQQLLLPQ SGAVQAPNIA 2040 PLQHQHQHQQ QEEGLGDGQP PRHPRHPHHP HQRQPPLRHR DRLFVRHSLQ PERHRFKRQQ 2100 QQQQQQQQQR LQQQLPLLRG ADTSLAAELL AVDDPVGLF*

Sequence ? help Back to Top

Protein Sequence Length: 2140 aa Download sequence Send to blast

MEAEQGESQD YEAAEGLPVI WTKHEGTCID SMLGCRRGSA PLRCKVSGCT SDLTSAPKTH  60
QRFRLCNLHI KAPVILVDGV ASRFCQQCSR FHPLKEFHGS NRTCRMMLIK NRARQRGMGT  120
ACTSSLYDSS TAVISAIRKR SLPLVTLPPV LKPAPAAPAP AAVTAAAVAA ATRTAATAME  180
VGPATATATA TTDSSWISTH AAARHFARPS PASETPPDAA VAVTPVAQLA KPVSEPLSHA  240
PAAVSKKTAT FEPSNRAAVA AAALAPAAVV ALAAAAMPHC ACVVSDATSH PLPQTPSWGA  300
LGAHSTAAGG GEDAPAASTA LTATAAGGGM GAVWGGQIHV TADGGAAAAA AGSTAVMAAS  360
PATASCISCS SSSVGAQASA SAAAPLPCRP PAWATSAEGP AAAAVPAASR LSPFARCSAP  420
SVLCQPNGAS GIAWAVAPPS AAISPFLAAA LRNRCNGGHS EWLLAGDQLP LQEQQQEQQQ  480
QQQQQQRNML QMLQGRKFMK YGGTAAVVHQ PYLCYEPSLQ RILQSRQASL PRGASSVGSG  540
GGGGDSGSGG GGDSSSGGGG GPDGVDGDGG GLPRDCDGGW WGTDDGPTDE GFKRSGGYSG  600
GSGGGVNAAA AAACPLFSRM SAPPPQEVAS QHQLSAELRC NSTGSIFYRR SAAAAAAGPS  660
VLGAGPRATG GGGSFTGLQS VGSFGSFKRR RSFVFEDAAA ATGGDDDGAA ASVRHCSSAG  720
PTEPALDAAV AKAVAGAAAA GTTLLPSPFS HGGGLQLQGS LDHHHYYQQQ QQQLWQQRQL  780
CHLRQRDNLG GQSSAHDARG ASEDRPGSPI GVVRRDFGLV SEDVGSDGGG PAGMVEDGDI  840
GSGGGEKPLQ ASPMGQRQLA LAQGEGSSIG RRSSLAVATA ASSPSAAAEL FTTCALLPSP  900
FSTATARTAA TAACGGVGRD SAPLTPRGAT MLVLGALVLD EKAERRGFDS TKGTAAAAAA  960
AATATFATTA AAAGPEGTAG DANAADGGAA KADAVSAASQ GDSILIAKLA AEWGSEGKPD  1020
SGDDDDDIRV LLGGVLEEVE GLTRHHRDAD VAVVPWTTAT MTPAVPLRPP PPPQPSAQTE  1080
PQVTLLLPPL LPSLITADAA TANRSSPGVY GAPSTSSLAA VAPGKIAVTA VAPPGPFTRS  1140
STVAGWVPSS RGGVQGAHAA AIVADAAAAG ALAARSPTTG EELVTAAAGS MPLLLQPSPP  1200
LLQLQIGGGG AAAGAGGSHP DSFQQLLPMW VRSAQSEPMW STRSGSTVCR QQQQQQPSAH  1260
IQEQLVQLQL QLQLQQQQML IQQQSILIQQ QQQQQQQQQG QQQQQQGQQQ QGQQQQQLTL  1320
TSTQQETCAA AGAAPALVTA AAAAGAPKGA AVRVPGAEST AAATGDVPAA NPIAAVGAVA  1380
QSRRQRCVRE RERQRDPAVA AVAVGKSSLE SSPGSGSSTA TRSIRKKAVG EETEEQLQLL  1440
LGDLIGGCST KPAASPPPLP ASATIAMTPQ VPGQQLLQPG SSAATGGGGA AAVTAAQQVV  1500
EQQGTIMRQR PAAAAAAGAG ADNGSWPAVK GPGGGAASTC YPLSSYHLTA AATAASASPL  1560
RRGEEEGDGA GGSGCGGGGG EGEPRTWQQQ QQQVQQLQLP KDYAVASAWT PSAVHVVVPA  1620
AAEDGAEGPL LPGGQQVPQL QLQQKQQVEQ QHLQCLPQQK EQQLMMQQQQ QQQPPGWAGL  1680
PCLGVGHQAP GAAVAAAPTT SPFPQLATAS SCTCTLTSDV VPTTATAMAI TTDTTMNTLA  1740
VAAAATASAA TPTEVAVVSR TSNATLPEVA ASTNNAALQP LPQQHQQQLH ALQQQQEQPP  1800
PQPQPQPQQM QTSSFVAGHR PTSDADPSMS HNSCRTFPYT SPPELPSSSA GGSPAGAGVA  1860
AAASQLPVGG ASLPDGDFLD MALLQQRRLW GELRLMHEHQ VALMQQQMEQ QEVLARLLGL  1920
TKASSGGGGS GGEASSLLAQ LNCGSGGGGS GGGSGGGGSG GDNNNNRSSC CVLSGDLNGS  1980
MQPEFGRWSM PASLTMRGVG VGGTDDSLSL AVLQPPPPPP PQQQQLLLPQ SGAVQAPNIA  2040
PLQHQHQHQQ QEEGLGDGQP PRHPRHPHHP HQRQPPLRHR DRLFVRHSLQ PERHRFKRQQ  2100
QQQQQQQQQR LQQQLPLLRG ADTSLAAELL AVDDPVGLF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	7e-17	38	116	4	83	squamosa promoter binding protein-like 4

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP20	12	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33810.1	3e-19	squamosa promoter binding protein-like 3

Link Out ? help Back to Top
Phytozome	Vocar.0013s0255.1.p