PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0014s0006.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family C3H
Protein Properties Length: 846aa    MW: 84658 Da    PI: 8.0639
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0014s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH201.2e-06246265626
                          -SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                          C+++ + G+C +Gd C++aHg
  Vocar.0014s0006.1.p 246 CPDYKQ-GFCIRGDVCPYAHG 265
                          ******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.203.6E-881136IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.02E-781135IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.08482114IPR002110Ankyrin repeat
PROSITE profilePS5029711.85182148IPR020683Ankyrin repeat-containing domain
CDDcd002042.55E-584135No hitNo description
PfamPF138577.2E-785123No hitNo description
PROSITE profilePS5010311.967240267IPR000571Zinc finger, CCCH-type
SMARTSM003560.0018240266IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-4246265IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4272304IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.822275299IPR000571Zinc finger, CCCH-type
SMARTSM0035616275298IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 846 aa     Download sequence    Send to blast
MESEVIGHYL IASNGGPATP LKNESTVLFQ DVVSDKLSNV EAAIEADASK LHQFFLILHW  60
SGDANGALDA NGAAAKTSVM VKQRTLLMIA AHAGSLRVLA YLLARGAEPS RKSADGLTAY  120
DLAVAGESSQ AATALAMMRD ADSHPSSSTR SSSTTETQSF TGTDAVRGVN RQGAQDSVAD  180
SEGSSYSTTD LTRPEYSTDD FRMFNFKVLR CSKRHAHDWR ACPFAHPTEN ARRRDPREFK  240
YCALACPDYK QGFCIRGDVC PYAHGVFECW LHPSRYRTQL CKDGANCHRP VCFFAHSLPE  300
LRAPTYTWVP SPADLAKPPA AAATAASSGT SSALQSSTSM TAASAMALGG GADGAVAGGP  360
PPVQVGSPMA VTGPEGRSLL STASSGLPPA STSSDGTSSG IGPSCGSPRT LNGSGSGMLQ  420
QLQLGMGPGS GLVGSGCGGM VMMTSACNGN GNGLAVGTSS SSCSSGANGS PSPSCSIGSK  480
DGGCANGNGN GNGVVAGGIL AVVPAATANG GGGGKEGKGS SGAGGTPGSG GKGNQNLTQP  540
NAAASMFGFT APRMSNAFAR RHGLNPKDNP MLNLQKIALQ SQQQQQQQQQ QQVQQVQQVQ  600
QQQQQAQNSA LGIAGGHLGA FGPQDGAAAL RNHAAVAAAG NGAGIIQAAA AAAGTAGSRA  660
AANFNSSANG QRLQVAAAAA AAAAAAAANS ATSPGAFSTV PFANPAASPF GNHVAPLHAH  720
MQMHAAAAAA AAHLGANNPA DPSLLAAQLA ALNIQQQQQQ QQQQQRQQHL GIGIGIGGIN  780
MASGAAAAAA AAAAAGIGHG PVQYVASAAP HPALIHTGMY GPGGGMYDTA QQHLMVAMGG  840
AQAEV*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002958507.10.0hypothetical protein VOLCADRAFT_99797
TrEMBLD8UIN80.0D8UIN8_VOLCA; Uncharacterized protein
STRINGXP_002958507.10.0(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP601532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.25e-50C3H family protein