PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vocar.0015s0075.1.p

Organism

Volvox carteri

Taxonomic ID

3067

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox

Family

bZIP

Protein Properties

Length: 1387aa MW: 138475 Da PI: 7.8608

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vocar.0015s0075.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.4	4.9e-11	625	668	4	47
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 k+ r++kNR+AAr++R++K a + +e+ keL a+N+++k Vocar.0015s0075.1.p 625 EKARERREKNRIAARKCRAKKVAMVRGMQEELKELVAQNQEMKM 668 57888***********************************9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.0E-11	620	669	No hit	No description
SMART	SM00338	1.9E-5	622	686	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.9E-8	624	669	No hit	No description
PROSITE profile	PS50217	9.657	624	669	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	6.1E-8	624	667	IPR004827	Basic-leucine zipper domain
CDD	cd14809	6.03E-14	627	669	No hit	No description
PROSITE pattern	PS00036	0	630	644	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1387 aa Download sequence Send to blast
MSALLVTQSH RQPHQRQNRI GQAKSQEQFQ QQQRQQQQGQ QQRPLEQQPQ RQPGAGNCKP 60 SLQTQQQPHQ QLARNPIGPP SFFAPKTRAG EAATATRFDI VSSGPNSAEG SSAGGLQAEV 120 PIGISGPANV AGAPGVQIGV NNGSALENGA ATLRPQSQRQ SAYQVKQSPQ NYVGGGKRKL 180 APRTHVEVAA RCLHSARKKL ARLLSDVLVE EKERLMLFSS AWGHTHAYSA ACRNEIDPPG 240 ALIPPHHQAS SFRRVEPLLP ATMGLNPSPF LLASGGGGGG GGLTAVLPGG GGSSGGGGNG 300 SAIASCIRAT GPSSASGGSR VPAAGAGGSG GGGGGGGGGG SKRKREASTA AAAAVSSRGG 360 GGGGGWGGAG CTSSEAAGKG GGGRRRYFRD RSAVRSVFKN PNHSSSNQTI LTSPALLLPD 420 AGRLLAADGE PPVRSSPRPD GVMFGFSVPY SLDADGSPAV TASTGAGAAT RPPSRSQGLA 480 AVESSTSGGG GGGGGGKEDA GALRPPAAAA AAAPPPGKSP FAVAATAVAA AAAAAAAESG 540 LSNAVLEDVV GVRMAMEAWQ QHHHQHHQQQ QQQRQAFAGL GSNGNDNGNN DPSSELATEG 600 NCLAGEDGEA EGAGEGVEGE DEDPEKARER REKNRIAARK CRAKKVAMVR GMQEELKELV 660 AQNQEMKMQA PPSHEAPRSA ASPSSIPNTA FPAAASRHSS HSSSPPLAPL VLLQVVTWHR 720 MFSREVKLRE AMKRVIFAVW TSNAIRSTGQ WVRPLRLLFG CRIFFGLCFS VYVERLELWV 780 LIRGYTANDV IIGLEAGTLD VNSISAMLQR NAAAAAAVAV GAAAAAGVAL HPPPAAAAAA 840 TALLPAVVGG SSSNGGAPLP PLPPPAAQVI NEPGSLHSAT LRQPPPLLPV SPSAGRVAAA 900 AAAAADQLPS LLPSLHSATA APPAALPVGL PAGSPVSPRL PPPLSPSSDS GGSYWAAAAA 960 SRPYDCVPSP LPPLPLALPN QAHEMPLSPR TRTEQYQTLS PQSPIATAFA TAACQHPSSS 1020 PPPPPPASGS NVSAPTVTTA AAAALGPCSS FSPYTICQDP ASGLDAAAVM AGGGGDGVRA 1080 ASEDSGCEGS AAKADAAAAA ATAVPAPALP HYRHCSAPSN VVTPCDTSPG TALTTLPAPA 1140 PSPAQTIYSG GGAATAATAA GAATGGAAGE GDDGGGGDTQ LLHDAASDDG TMLQLPFLDA 1200 SFSLARLLSL PTAAAAAGGG GGGGLCSSSL PPAPQPLEAI LGTGGGSMRL PSFNLDAAPS 1260 STLLALADPA LLMVRHDSGG MDWLANLQMD AAGGVIAGGC TASADDAAAL AAALTAAAVV 1320 DVVVIILLLL LKPLFCMQWG FEVELDNVAV WRRGPTVGVT SSVSVRVDEG KGCTEGPKCT 1380 AADIAG*

Sequence ? help Back to Top

Protein Sequence Length: 1387 aa Download sequence Send to blast

MSALLVTQSH RQPHQRQNRI GQAKSQEQFQ QQQRQQQQGQ QQRPLEQQPQ RQPGAGNCKP  60
SLQTQQQPHQ QLARNPIGPP SFFAPKTRAG EAATATRFDI VSSGPNSAEG SSAGGLQAEV  120
PIGISGPANV AGAPGVQIGV NNGSALENGA ATLRPQSQRQ SAYQVKQSPQ NYVGGGKRKL  180
APRTHVEVAA RCLHSARKKL ARLLSDVLVE EKERLMLFSS AWGHTHAYSA ACRNEIDPPG  240
ALIPPHHQAS SFRRVEPLLP ATMGLNPSPF LLASGGGGGG GGLTAVLPGG GGSSGGGGNG  300
SAIASCIRAT GPSSASGGSR VPAAGAGGSG GGGGGGGGGG SKRKREASTA AAAAVSSRGG  360
GGGGGWGGAG CTSSEAAGKG GGGRRRYFRD RSAVRSVFKN PNHSSSNQTI LTSPALLLPD  420
AGRLLAADGE PPVRSSPRPD GVMFGFSVPY SLDADGSPAV TASTGAGAAT RPPSRSQGLA  480
AVESSTSGGG GGGGGGKEDA GALRPPAAAA AAAPPPGKSP FAVAATAVAA AAAAAAAESG  540
LSNAVLEDVV GVRMAMEAWQ QHHHQHHQQQ QQQRQAFAGL GSNGNDNGNN DPSSELATEG  600
NCLAGEDGEA EGAGEGVEGE DEDPEKARER REKNRIAARK CRAKKVAMVR GMQEELKELV  660
AQNQEMKMQA PPSHEAPRSA ASPSSIPNTA FPAAASRHSS HSSSPPLAPL VLLQVVTWHR  720
MFSREVKLRE AMKRVIFAVW TSNAIRSTGQ WVRPLRLLFG CRIFFGLCFS VYVERLELWV  780
LIRGYTANDV IIGLEAGTLD VNSISAMLQR NAAAAAAVAV GAAAAAGVAL HPPPAAAAAA  840
TALLPAVVGG SSSNGGAPLP PLPPPAAQVI NEPGSLHSAT LRQPPPLLPV SPSAGRVAAA  900
AAAAADQLPS LLPSLHSATA APPAALPVGL PAGSPVSPRL PPPLSPSSDS GGSYWAAAAA  960
SRPYDCVPSP LPPLPLALPN QAHEMPLSPR TRTEQYQTLS PQSPIATAFA TAACQHPSSS  1020
PPPPPPASGS NVSAPTVTTA AAAALGPCSS FSPYTICQDP ASGLDAAAVM AGGGGDGVRA  1080
ASEDSGCEGS AAKADAAAAA ATAVPAPALP HYRHCSAPSN VVTPCDTSPG TALTTLPAPA  1140
PSPAQTIYSG GGAATAATAA GAATGGAAGE GDDGGGGDTQ LLHDAASDDG TMLQLPFLDA  1200
SFSLARLLSL PTAAAAAGGG GGGGLCSSSL PPAPQPLEAI LGTGGGSMRL PSFNLDAAPS  1260
STLLALADPA LLMVRHDSGG MDWLANLQMD AAGGVIAGGC TASADDAAAL AAALTAAAVV  1320
DVVVIILLLL LKPLFCMQWG FEVELDNVAV WRRGPTVGVT SSVSVRVDEG KGCTEGPKCT  1380
AADIAG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	328	340	SGGGGGGGGGGGS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002946811.1	0.0	hypothetical protein VOLCADRAFT_87166
TrEMBL	D8TKC6	0.0	D8TKC6_VOLCA; Uncharacterized protein
STRING	XP_002946811.1	0.0	(Volvox carteri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP8908	4	4

Link Out ? help Back to Top
Phytozome	Vocar.0015s0075.1.p