PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0015s0393.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family MYB_related
Protein Properties Length: 1066aa    MW: 107690 Da    PI: 5.917
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0015s0393.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding231.8e-07182224347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +W+ eE+  +++a +++G + Wk+ ++ +g +R    + s+ qky
  Vocar.0015s0393.1.p 182 AWSSEEEAMFLRAMELHGRD-WKRGSELVG-TRDHRAIASHAQKY 224
                          7*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.68175229IPR017930Myb domain
SuperFamilySSF466892.32E-9177227IPR009057Homeodomain-like
SMARTSM007172.7E-4179227IPR001005SANT/Myb domain
TIGRFAMsTIGR015572.1E-8181227IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.604.1E-4181219IPR009057Homeodomain-like
PfamPF002495.6E-6182224IPR001005SANT/Myb domain
CDDcd001670.00209182225No hitNo description
SuperFamilySSF1027121.12E-17510617No hitNo description
PfamPF013982.9E-11518616IPR000555JAB1/MPN/MOV34 metalloenzyme domain
Gene3DG3DSA:3.40.140.104.7E-15530633No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1066 aa     Download sequence    Send to blast
MDTSADEAIA RALGAEYYGA GDPDYAADAA YIDDSEDSDY GGGPRKRKRK VGGGGRGRGR  60
GRPPGGNPFE TASSPPKPTQ LRGGHAPALL ARCLTLQPGL TGASRVPPPP LHAAPLPRTA  120
QLSGSGAAAR HDTPVPAAAA AAGSAGDPSD GDGDSDDEGD DRTKSGRRRR KDVGKQRQAG  180
RAWSSEEEAM FLRAMELHGR DWKRGSELVG TRDHRAIASH AQKYFIKLCL AGKPLPMAVA  240
RTGLGYTLSG AMLDPYSAAA RSYGFKPELL TRLSPEELQQ ALSGLDLDRL PVMYGGRLPD  300
DQAPPPPPPR STSAGGVLAA SQDPNQAAAA AAMAAAVAAA AAAAGGGVQG ITPAQLVAAA  360
AAAAAQAQLT AAGSLGLPTA APAAAPIANP SAAPAFGSFT ALLSGAADGG ANATSTAPLG  420
SLSAALAAAP VAAAAAAAAV SPLMVLPPPP PPPATVPAVA VRTEYARNRP RRELAGQRAQ  480
MGLTSESLQL VKPQEFMGLP GSGAPRSQPY TVDMSTWALM AMDFHAHLSS YEVIGLLGGT  540
WNPETRQLVV IEAYACRRAE GSDAATSVEL DPESQVEVQS MMEAKGQQCV GWYHSHPVFE  600
PSPSQKDMDN QRNYQALFRC ETTKLEPFIG IIVGPYDLAL PQPISIITTF VVQSFKGSLV  660
PYSVRCQLHG YEVVPDSPMM SKLLAMLDTF RDDPGRVDLG QLWRGYSYIM ADGSVDAVPL  720
TRLAKLRHSL STYMREADPA AVRQVLDLLC SELANRWGVN LATALAAGDG AATGPAAALG  780
LPPPDANGVA AASAASDGPP PGGSMLGLLL EDGDAAPPPP PPPPPAADVL GLTAGAAVVA  840
AAPQQIGTGG LFQAMLQDDD DDDGGHNNAP QLSPAAAAAA VVAAGPLTAA GPGQGATEPG  900
AAAPPSPSTT WPAAAGLSAA LCNDGTGVRS SGWWLRAAAG GFAVGRLHPP PPTVAISGRA  960
LRGGGPPGPG CGTGWPRDEQ IGGECAVGVA GGCRSAADGA CGGLGGVGGM HLVESNLLGA  1020
TILSGRYGIL NVGGCAVRRP VSKSGGRELT GREGDCTAGS GIARP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14449RKRKRK
2166171RRRRKD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002946677.10.0hypothetical protein VOLCADRAFT_116093
TrEMBLA0A2K3DXF90.0A0A2K3DXF9_CHLRE; Uncharacterized protein
STRINGXP_002946677.10.0(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP229888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01060.49e-10MYB_related family protein