PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vocar.0016s0123.1.p

Organism

Volvox carteri

Taxonomic ID

3067

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox

Family

bZIP

Protein Properties

Length: 1107aa MW: 113842 Da PI: 7.1398

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vocar.0016s0123.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.6	7.3e-10	56	117	1	62
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 e++ +r rr+ NR +A+rsR ++++e+ Le+ v++L e ++L++el +++ ++l se Vocar.0016s0123.1.p 56 EEDERRRRRLLANRRSAQRSRVKRLEEVGVLENLVDTLMREVEELRSELGTWSSRQQELLSE 117 5677899***********************************************99999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.6E-8	56	120	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.7E-8	57	117	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.53	58	121	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.5E-8	60	114	No hit	No description
SuperFamily	SSF57959	3.24E-7	60	114	No hit	No description
PROSITE pattern	PS00036	0	63	78	IPR004827	Basic-leucine zipper domain
CDD	cd14703	9.63E-8	71	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1107 aa Download sequence Send to blast
MSRVRRREAS YVDSDYEADM AADRRRGGSP SPSPEMHARS GKRPKAGRTT SEGTSEEDER 60 RRRRLLANRR SAQRSRVKRL EEVGVLENLV DTLMREVEEL RSELGTWSSR QQELLSEQSK 120 LADRLKEETG VTDIDVLCIA TIEDDEEKQQ QQKDGEQQQQ QKLLAPEQEQ QQQQPPLAQL 180 TRTLPPQQQT ALHQTQQIAS PLPMSPSPPL PQPQQELPLQ LSAQPPSSSQ RQQQQQQQPP 240 QVAQSVEQET WHDRSPQSPA LPVPQQQQED QEEEKEQRQQ QQQQKGCRPA GRTGVAASQQ 300 QQQQQPQQQP EASEEVVMEC ISPGRLLEIC TTPLHDVENH QSHLPHLGAS EQVVPRLLLG 360 ASGVSGRGVP AVDNVELKCR ESCTGDVDDS CGRGSGSGGG AAAAATVATA VAAASRASQT 420 LGQPYPGAAK LEPSVDLEAG SGNSAGSPLA GRPAASGPLI TSSIAPAAVA VAYGDRASQL 480 GRDNSLPCHA EVSYGSHPQQ PSPQQQLLQL HQLPPTPAQR QQDEEQQQQQ QQQQQPRSGG 540 SPPGSVGNFM PTPPHPALSS SMQPQRGLRS EYRSGSGGGG GVGGGGGRDS GGGSGSGSGS 600 GGGACRAGTY NTAPAAFTSA SASVATVSPT RLALTSAPVM APAPAPAATA CSDPRADGAS 660 PSQQLMVQPT YNRSGLARGP GPSGGTMQPF RPHCTHPEHT QQQQQQHQHQ PQHPHPAGEG 720 FVTAMTACRS WDEFDAASPL SYGSKDSPSA AAAAAAAPGG ADTLSPVVKY GRGAPAATRQ 780 SSDGSGRSGA APLPTHVPVG QLLEPHLHLH RPHIAVLPSA ASSRPRAVGV PPPHHNIVRT 840 VEALMGAAGG RHGDAGAPPA AGPAAAAAAA AAAAAAAARP GMAPGMPQHL PPAFLYNRLP 900 AVTGAASGAG VPAGALAHAP QNVGHPSRNP YMGPTVPGDM LASDRRADDA LSGGGAAAGS 960 LAAATVSLPP PAAALLGHAM AFQGRVMTHG SYSPGGTHPT GSADSTSSNS GNRRRSISSD 1020 SERSLTYLAP GALRSLQSEA IAAAAAAGGP LLHPHGVVPQ PCPGITGHGA GAAAAAAAAA 1080 VAAGAKMGYP GAAGASGLML TKWDLL*

Sequence ? help Back to Top

Protein Sequence Length: 1107 aa Download sequence Send to blast

MSRVRRREAS YVDSDYEADM AADRRRGGSP SPSPEMHARS GKRPKAGRTT SEGTSEEDER  60
RRRRLLANRR SAQRSRVKRL EEVGVLENLV DTLMREVEEL RSELGTWSSR QQELLSEQSK  120
LADRLKEETG VTDIDVLCIA TIEDDEEKQQ QQKDGEQQQQ QKLLAPEQEQ QQQQPPLAQL  180
TRTLPPQQQT ALHQTQQIAS PLPMSPSPPL PQPQQELPLQ LSAQPPSSSQ RQQQQQQQPP  240
QVAQSVEQET WHDRSPQSPA LPVPQQQQED QEEEKEQRQQ QQQQKGCRPA GRTGVAASQQ  300
QQQQQPQQQP EASEEVVMEC ISPGRLLEIC TTPLHDVENH QSHLPHLGAS EQVVPRLLLG  360
ASGVSGRGVP AVDNVELKCR ESCTGDVDDS CGRGSGSGGG AAAAATVATA VAAASRASQT  420
LGQPYPGAAK LEPSVDLEAG SGNSAGSPLA GRPAASGPLI TSSIAPAAVA VAYGDRASQL  480
GRDNSLPCHA EVSYGSHPQQ PSPQQQLLQL HQLPPTPAQR QQDEEQQQQQ QQQQQPRSGG  540
SPPGSVGNFM PTPPHPALSS SMQPQRGLRS EYRSGSGGGG GVGGGGGRDS GGGSGSGSGS  600
GGGACRAGTY NTAPAAFTSA SASVATVSPT RLALTSAPVM APAPAPAATA CSDPRADGAS  660
PSQQLMVQPT YNRSGLARGP GPSGGTMQPF RPHCTHPEHT QQQQQQHQHQ PQHPHPAGEG  720
FVTAMTACRS WDEFDAASPL SYGSKDSPSA AAAAAAAPGG ADTLSPVVKY GRGAPAATRQ  780
SSDGSGRSGA APLPTHVPVG QLLEPHLHLH RPHIAVLPSA ASSRPRAVGV PPPHHNIVRT  840
VEALMGAAGG RHGDAGAPPA AGPAAAAAAA AAAAAAAARP GMAPGMPQHL PPAFLYNRLP  900
AVTGAASGAG VPAGALAHAP QNVGHPSRNP YMGPTVPGDM LASDRRADDA LSGGGAAAGS  960
LAAATVSLPP PAAALLGHAM AFQGRVMTHG SYSPGGTHPT GSADSTSSNS GNRRRSISSD  1020
SERSLTYLAP GALRSLQSEA IAAAAAAGGP LLHPHGVVPQ PCPGITGHGA GAAAAAAAAA  1080
VAAGAKMGYP GAAGASGLML TKWDLL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	68	74	RRSAQRS
2	585	592	GGRDSGGG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002948205.1	0.0	hypothetical protein VOLCADRAFT_88603
TrEMBL	D8TPG0	0.0	D8TPG0_VOLCA; Uncharacterized protein
STRING	XP_002948205.1	0.0	(Volvox carteri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP12240	3	3

Link Out ? help Back to Top
Phytozome	Vocar.0016s0123.1.p