PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0017s0120.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family AP2
Protein Properties Length: 1405aa    MW: 149207 Da    PI: 7.9589
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0017s0120.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.71.1e-1111381189155
                  AP2    1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55  
                           s+++GV+ ++++grW+A+I++    + + ++++lg +  +  Aa+a++ a +k +g
  Vocar.0017s0120.1.p 1138 SRFRGVTKHRRSGRWEAHIWV----KeIGRQVYLGGYEEEVHAAEAYDVAVLKCKG 1189
                           789******************....4345**********88*********998765 PP
2AP2271.1e-0812761325155
                  AP2    1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55  
                           s y+GV+ +  +grW+A+I  p   g +k+++lg f ++ +Aa+ +++   +l+g
  Vocar.0017s0120.1.p 1276 STYRGVTAHL-SGRWEARIGIP---G-SKHIYLGLFESERDAAASYDRSLVRLRG 1325
                           569****999.7*********8...3.6**********99********9999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.85E-1111381200IPR016177DNA-binding domain
CDDcd000182.85E-1811381200No hitNo description
PfamPF008471.9E-611381188IPR001471AP2/ERF domain
SMARTSM003802.1E-2411391204IPR001471AP2/ERF domain
PROSITE profilePS5103216.52911391198IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-1411391199IPR001471AP2/ERF domain
CDDcd000181.23E-1512761335No hitNo description
SuperFamilySSF541719.81E-1312761335IPR016177DNA-binding domain
SMARTSM003808.0E-2012771339IPR001471AP2/ERF domain
PROSITE profilePS5103215.43512771333IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-1412771334IPR001471AP2/ERF domain
PRINTSPR003674.7E-512781289IPR001471AP2/ERF domain
PRINTSPR003674.7E-513151335IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1405 aa     Download sequence    Send to blast
MSEVRPSGSI QFCNLPEGAV QGVSSMEPLA ELTPEHHDSA LVAAAAVGVG VGVATVAVVP  60
PRQPQRSMRA LDGLALSASH GYRALDDDCD GERAAIQGYS SLRHVVQFNT DADTAPFNAA  120
FTAKAPNASA APAAPPAAAA AGEPPASVTA DVPSSREAPP PPPPPPLPPP PPASQVAGED  180
IGNLTDRIRR RSRQLHCSAV HITPYKCHTD VTATATITIH GDQSRQAPVI PSPGTSLDFG  240
NQEPLPPPPP PPPPPPPPPP SGPGGSGGLP GGRTCPTTQV NQHSVLDLGY NHQSNHNQYN  300
RYDQSQLHLH QPPNDVVSYG ANGLTDGDCT PGTDCATTPA TRGHAAVERL ESAGSAVTFG  360
AGIDEAGKAA ARRRPISDGG GGGGGGGYGG GGNDGCGGRR GRSVQASSPS TGVVLDSHLR  420
QPYTVQYHHL HQSHLLPPGN DRGTAPWGPP GYGPPAAAQP GQPANGAGAT AAGGTSTQLP  480
PQELMNRQHV TAPQLPQPPL SRETYGTAYH PRSFGNPFRA RGSSGPVAVA VVADDELTDH  540
GPQGHTTTGS GSLLGERENL YGNINMVPLQ AAGQTKYSDA VQSVGTAVQH YPIEELPSSP  600
QQQHYYRHHQ HQPLQQQRHH HHDHHNQPWL QRNHLHPPTQ QPRSNLQRQD YHRRPLHQQQ  660
QFQQQQQQQQ HQGPSPGAMA GGSSHLTTAT ATAAQSHGQY PAAQSSERRR MYEQQRQQQQ  720
QQQQQQQQQQ QLQQQQQQQQ QQQQQQQQQQ QQQQQQQQQQ RQQRQQRQHN PPHYHPHQYH  780
HHLQNTAFQT SADIPSSGAD TAGRFGMYDS VHGQGLGFPQ PAVESQQQPS TPAAAASRYA  840
DLADPIEGHS AGGLRAERRA LSSLDWRGPL SAALQDSGGG FPGGDQGGVM YGNSMDVYGL  900
TPAQPNEDTD DVLLTYLHHG GSTGAAAAAA FGEARLLYPP TAPDNPSATA ADSAPMRSAS  960
APATVSSSQN LTFAFGMGDG NRRTAAWVGE EVQGQAAAAL AAGGNVQPTH DFGGAGPVIE  1020
AAGRISTKGQ GKPRRGAAVA EVVATPLPAA PHAPPLPAIL LGPQGAAGAG AAGTSSRAPK  1080
RSAAMAALAR FHSSRQGRSS SGDSRSVAAA AEDSHGGGDA DGQQEGGGEE GNGKRRSSRF  1140
RGVTKHRRSG RWEAHIWVKE IGRQVYLGGY EEEVHAAEAY DVAVLKCKGT KGVRTNFPIS  1200
QYQGLLPSLK DIELEDLIMA VRRQMCFLVK PPRNKGAKPA GSLYFIILCR TDRCRTMMHS  1260
IGHIAMWMQG FSRGSSTYRG VTAHLSGRWE ARIGIPGSKH IYLGLFESER DAAASYDRSL  1320
VRLRGSSAAT NFPLSEYRRE LAEYHSYQQA VLLQDQRMAS LMKPGPDYEK WVKAGFSAFP  1380
HIQMEQAAAA GEEAAARDLE LKRS*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002953244.10.0pathogenesis-related genes transcriptional activator
TrEMBLD8U3L90.0D8U3L9_VOLCA; Pathogenesis-related genes transcriptional activator
STRINGXP_002953244.10.0(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP561657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.11e-35AP2 family protein