PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vocar.0018s0169.1.p

Organism

Volvox carteri

Taxonomic ID

3067

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox

Family

NF-YC

Protein Properties

Length: 501aa MW: 49640 Da PI: 9.9482

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vocar.0018s0169.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	45.7	1.4e-14	8	83	22	96
NF-YC 22 Pl.arikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 Pl +rikk++++d+dv +is +P+l+ +a elf+ +l ++ a++ + +tl s ++aav+ ++ dfl + v Vocar.0018s0169.1.p 8 PLaTRIKKMMQTDDDVGKISQATPILIGRAMELFLEKLCRQAISIAQSRQAKTLTPSHLKAAVKADTTLDFLAELV 83 6636********************************************************************9877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	4.36E-18	11	87	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	7.2E-24	11	83	IPR009072	Histone-fold
Pfam	PF00808	1.8E-16	11	70	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 501 aa Download sequence Send to blast
MKTRKICPLA TRIKKMMQTD DDVGKISQAT PILIGRAMEL FLEKLCRQAI SIAQSRQAKT 60 LTPSHLKAAV KADTTLDFLA ELVAPAPDLP AVEAENGEPA PKPNKRRRTN DSADGLTSPE 120 GGRGRGRSGG GGGATTSGQA NDETSPGPPS RGRGSKPPVP PGSQGPSSRG TKKESTGRRG 180 SKGKAAAAAA AAAAAAEAPE GGSSDAAEPT GSASPPPPPT VQAPSSEAPV PGLPAFAPSV 240 QPPKRQEPPI KQEASTKPEP AAGPPPAASS GGPSGGTPGT SIVASLRAQQ PFFGLGRKGK 300 NLGGSKSSVG APSPSSAQGQ QAQRVQTQHT SPQPMLEAPA SSKATVAAPS TDEGQWTQQA 360 QPGIFPLRLQ PLDSSAHAAS AAAGLALPDA ASARQSGANG VRGPENVGAQ QAAFGQGRDG 420 SGMGAEVGGG QDAGFGQGQL SIVGSCGGQL AAGPSLVGGA AQGGRAGTGL GSLMAPLGAS 480 FAYFQAPQQQ GDMDDDYDNY *

Sequence ? help Back to Top

Protein Sequence Length: 501 aa Download sequence Send to blast

MKTRKICPLA TRIKKMMQTD DDVGKISQAT PILIGRAMEL FLEKLCRQAI SIAQSRQAKT  60
LTPSHLKAAV KADTTLDFLA ELVAPAPDLP AVEAENGEPA PKPNKRRRTN DSADGLTSPE  120
GGRGRGRSGG GGGATTSGQA NDETSPGPPS RGRGSKPPVP PGSQGPSSRG TKKESTGRRG  180
SKGKAAAAAA AAAAAAEAPE GGSSDAAEPT GSASPPPPPT VQAPSSEAPV PGLPAFAPSV  240
QPPKRQEPPI KQEASTKPEP AAGPPPAASS GGPSGGTPGT SIVASLRAQQ PFFGLGRKGK  300
NLGGSKSSVG APSPSSAQGQ QAQRVQTQHT SPQPMLEAPA SSKATVAAPS TDEGQWTQQA  360
QPGIFPLRLQ PLDSSAHAAS AAAGLALPDA ASARQSGANG VRGPENVGAQ QAAFGQGRDG  420
SGMGAEVGGG QDAGFGQGQL SIVGSCGGQL AAGPSLVGGA AQGGRAGTGL GSLMAPLGAS  480
FAYFQAPQQQ GDMDDDYDNY *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	5e-18	12	73	16	77	Transcription Regulator NC2 alpha chain

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	100	106	PKPNKRR

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP3343	13	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G19490.1	3e-23	NF-YC family protein

Link Out ? help Back to Top
Phytozome	Vocar.0018s0169.1.p