PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0019s0209.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family bHLH
Protein Properties Length: 415aa    MW: 43153.1 Da    PI: 5.0877
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0019s0209.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.58.7e-12127174454
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          ++  rE+ RR+++N++f  L +l+ +    + +K +K++iL+ A++Y+++ 
  Vocar.0019s0209.1.p 127 KKACREKARREKLNERFLDLARLVDPG---NEPKTDKSTILTDAIKYVQQI 174
                          5678**********************8...9*****************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.535123174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.53E-9126173No hitNo description
SuperFamilySSF474597.07E-14126190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-9127173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.8E-11129180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-12130188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MEAPCSLEQS CKLEQAGKGG AADDALNSSF LEFLTDDLVF GSEALDSTTL QAICQVADAQ  60
RELAGVSGAA VSAATQPGPL AASAQGMKRP LDDAGFSESD EEDEAGRGEK SAGKRTKGGE  120
MSAAATKKAC REKARREKLN ERFLDLARLV DPGNEPKTDK STILTDAIKY VQQITVENHQ  180
LKQLNKFLEV RRGNSKPGLS ACMFPEVGWS LTLFSTLEQE RVSSLERERG QQLYQHSLMM  240
MGQGQMMPAG QAMLVGGPAG MMACPVIAGA PMGHPHLQMP TAMAASAGNP LLSAASLPSA  300
STPPLPTMSN QQQQAGQASV LAQAQGGLLA QAQGAMMTQM PLPAATGTAL GPVGASVSTA  360
GVSFNVAGAN AGAGPSKPIM VNTVQGMMPY QGMYWLPPQM MDSTQDSLLR PPAA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00372DAPTransfer from AT3G23210Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2J8A8V82e-91A0A2J8A8V8_9CHLO; Transcription factor bHLH34
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP564977
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23210.17e-11bHLH family protein