PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0020s0149.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family C2H2
Protein Properties Length: 387aa    MW: 38963.8 Da    PI: 8.3035
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0020s0149.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.00011536323
                         ETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2  3 CpdCgksFsrksnLkrHirt.H 23
                         C +C+++F +   L +H+++ H
  Vocar.0020s0149.1.p 15 CYYCDRVFDDEAALIVHQKNkH 36
                         99*****************988 PP
2zf-C2H210.90.00143756120
                         EEETTTTEEESSHHHHHHHH CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHi 20
                         +kCp C++  ++   L +H 
  Vocar.0020s0149.1.p 37 FKCPECNRKMNTAQGLATHA 56
                         89*****************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.72E-51159No hitNo description
SMARTSM003550.191336IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801536IPR007087Zinc finger, C2H2
PROSITE profilePS501578.7673760IPR007087Zinc finger, C2H2
SMARTSM003550.13760IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803960IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009910Biological Processnegative regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MGKKKKNKEQ EIVFCYYCDR VFDDEAALIV HQKNKHFKCP ECNRKMNTAQ GLATHAFQVH  60
KLTVTAVPAA KPGRDSMSIE IFGMAGMPDD VRQAKLGDGP AAKKARTDDD DDVTPPPAPA  120
PAPPPPPAPA ASAFPQPAGP PPPGAPPGVP PPMGYPPGPY GPPPPYGYPP YGVPPPGFPP  180
RQGMPPAPYG APPPYGAPPP GYPPRPPPPG MPPHPGMPPP HPGMPSHSPH PGMPPPHPAA  240
GGMPGMPPGA PRPPGPYPPP YMPPPGAPGM PPPPGVPPQG VAPPGMPPPL FPISQPPPGL  300
PGQPPALFPV GAPPPGAMAA AGGPGAASAV SGAATPAAAP AAAAATADGS VVVWTDDEFS  360
IEERRAQLPR YGLGPPPPAQ LNGVAA*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002947469.10.0hypothetical protein VOLCADRAFT_79631, partial
TrEMBLD8TLS70.0D8TLS7_VOLCA; Uncharacterized protein (Fragment)
STRINGXP_002947469.10.0(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP41351011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30970.11e-32C2H2 family protein