PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0023s0018.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family MYB
Protein Properties Length: 954aa    MW: 100594 Da    PI: 5.3169
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0023s0018.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.94.9e-183682148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+WT+eEd++l ++v+  G  +W+tIa+ ++ gR++k+c++rw ++l
  Vocar.0023s0018.1.p 36 RGPWTPEEDKQLTELVTNCGAQRWSTIAESIP-GRSGKSCRLRWWNHL 82
                         89******************************.***********8886 PP
2Myb_DNA-binding41.43.4e-1388132147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +g++++ Ed  +v+ ++++G++ W+ Ia+ ++ gRt++ +k+rw++ 
  Vocar.0023s0018.1.p  88 KGPFSEFEDAVIVRSHEKYGNK-WSVIAKLLP-GRTDNAVKNRWNST 132
                          799*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.8283186IPR017930Myb domain
SuperFamilySSF466891.32E-2935129IPR009057Homeodomain-like
SMARTSM007172.3E-163584IPR001005SANT/Myb domain
PfamPF002492.9E-163682IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.4E-253789IPR009057Homeodomain-like
CDDcd001679.91E-143882No hitNo description
PROSITE profilePS5129420.64187137IPR017930Myb domain
SMARTSM007171.3E-1387135IPR001005SANT/Myb domain
PfamPF002491.0E-1188132IPR001005SANT/Myb domain
CDDcd001671.15E-990133No hitNo description
Gene3DG3DSA:1.10.10.603.7E-2390136IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 954 aa     Download sequence    Send to blast
MTGRKAAESG RPARPRASAK RQSSFREDDI GEGEKRGPWT PEEDKQLTEL VTNCGAQRWS  60
TIAESIPGRS GKSCRLRWWN HLSPQVKKGP FSEFEDAVIV RSHEKYGNKW SVIAKLLPGR  120
TDNAVKNRWN STLRRKHTGG TLNNKFVDNY PELEPLMADP EAAREAAEYS SSLNEGSGEG  180
FALSGTNICT GSEEDDVHHD HLEAEEDEDE RAEEEEAVEA NGEGQGVESN GDHHPTAEQA  240
VGEEPQLPSL SAVMTARRSN VARRGAAVAE TKHAPLSRSL STGGHHNNHD GRQQQQPHGR  300
RATLARAAHR AACTRKWADS TEENEEENEV VVETEDDGKP LPPTSQGTLE GGLSLSPSCS  360
PVPAVPAAAA AAASAAALPV AAAAVATAAA LCDHMPSAAG SSGSVTAMVG EVHPAVDEAH  420
PHPHLAQCCS AAAPAAPAAT RLQSTGAPSP PLSHHPTPPN PHPKQQHQQP SSAQASSPRT  480
APADCLNRLD LDLFPPASKR VRTSSVCTAT MTTTGQPLAR QTSTSASPLE LPSLPAPCQL  540
LATATTPAVT ASAAGAPPYP IRSVDLVMTA PSAGCLAAVR FSSVAGVGFK AEIAASASTD  600
RCSARSPSVP LLAPLGDSGG GSSSLLGSYV ALPSGAAQPL QQQLLLSHQV QTAEGLQPVA  660
SMPTLLDSPP EDDLEWQSIM ESLETTMQNE DVFDTPEGWA DALLQQQQLP QLQQSQQLLQ  720
QQVLLQQQQQ QQLQHIEQQQ QALAAQSGLR LVNTSSSSSS SCYSGAPSSA LSGGCSGLPS  780
WASSCSPQVP AAPLATAAAA TSCHLTQMPL QLQPITLLPS SELTTAQRRH RGMLAPPLPQ  840
QQQQQQLLFA TQEQQQQQLH IRSVLLGESP WAGGPAADLN MAMPFQLDLA GEGSCAGYLL  900
NHQQQQQQQP IMALFQPLQA TTTCSYIPST SSYDFGRFGG GGGCFSDPMA FFV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-38361364104C-Myb DNA-Binding Domain
1msf_C1e-38361364104C-Myb DNA-Binding Domain
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1516114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.11e-40myb domain protein r1