PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0023s0128.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family AP2
Protein Properties Length: 203aa    MW: 21971.4 Da    PI: 11.208
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0023s0128.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.71.7e-14130191153
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpse.ng......kr..krfslgkfgtaeeAakaaiaarkkl 53 
                          s++kGV+w+k++++W+A+++dp+  ++      ++  k+++lg + t+ +Aa+a + a+  +
  Vocar.0023s0128.1.p 130 SQFKGVSWHKNTKKWEAHLWDPTVpRKkdhpgkRNrgKQYYLGAYKTERMAARAFDIAAIVF 191
                          789******************9999777899963378**********99********99765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.18E-12130200IPR016177DNA-binding domain
CDDcd000184.20E-13130199No hitNo description
PfamPF008473.8E-9131193IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.7E-11131199IPR001471AP2/ERF domain
SMARTSM003802.1E-10131202IPR001471AP2/ERF domain
PROSITE profilePS5103215.633131201IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MEPVPSNGFI QSLGLDPSVS PPNDTTPPER PLPAVAVPTS SRNAPPVRGT ATKRSCHRRR  60
GGSSTNKRRG KASTTTRAGN RSSGNVGSNH LDHGHGGGLE GDDPVNATTM ENTVNSQTRR  120
TDSGPINKSS QFKGVSWHKN TKKWEAHLWD PTVPRKKDHP GKRNRGKQYY LGAYKTERMA  180
ARAFDIAAIV FWGLDTTINV SH*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002952021.11e-119hypothetical protein VOLCADRAFT_92648
TrEMBLD8U0701e-118D8U070_VOLCA; Uncharacterized protein
STRINGXP_002952021.11e-119(Volvox carteri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.13e-16AP2 family protein