PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0023s0184.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family AP2
Protein Properties Length: 231aa    MW: 25254.5 Da    PI: 10.4642
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0023s0184.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2323e-103691853
                  AP2  8 wdkkrgrWvAeIrdpse.ng......kr...krfslgkfgtaeeAakaaiaarkkl 53
                         +++ +g+W+A+++dp+  ++      +r   k+++lg + t+ eAa+a++ a+  +
  Vocar.0023s0184.1.p 36 RHRGTGKWEAHLWDPTVrRKkrtqggRRawgKQVYLGAYNTEVEAARAYDMAAIVF 91
                         57889*********99975567777744688**********99*********9765 PP
2AP231.44.7e-10137186154
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                          s+y+GV++++ +  W+A+I   +   g + +++lg f + e+Aa++a  ++  ++
  Vocar.0023s0184.1.p 137 SQYRGVTRHRASDLWEARIGNmF---G-KNYVYLGLFES-EQAAAMAYDFAALYR 186
                          78****************99988...3.59*********.777777766666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103214.44724101IPR001471AP2/ERF domain
SMARTSM003803.1E-1136107IPR001471AP2/ERF domain
CDDcd000185.34E-1236100No hitNo description
PfamPF008471.9E-53688IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-1336101IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-1137102IPR016177DNA-binding domain
SuperFamilySSF541714.05E-13137197IPR016177DNA-binding domain
PfamPF008477.5E-7137185IPR001471AP2/ERF domain
SMARTSM003805.2E-16138202IPR001471AP2/ERF domain
PROSITE profilePS5103214.882138196IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.2E-13138196IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MSAFFTPISS PNPQARRTPT APIEPRPDPP PPPPKRHRGT GKWEAHLWDP TVRRKKRTQG  60
GRRAWGKQVY LGAYNTEVEA ARAYDMAAIV FFGSAAKPNF SLEEAYGAEL ASLSKMGKED  120
VVNMLRRQCR SFSRGESQYR GVTRHRASDL WEARIGNMFG KNYVYLGLFE SEQAAAMAYD  180
FAALYRGGPS SLTNFDPRSY LQGSTGRTTA AAAAAAATGV PNLPTAVTTM *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002957465.11e-170pathogenesis-related genes transcriptional activator
TrEMBLD8UFK51e-168D8UFK5_VOLCA; Pathogenesis-related genes transcriptional activator
STRINGXP_002957465.11e-169(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP561657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-37AP2 family protein