PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0023s0210.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family AP2
Protein Properties Length: 585aa    MW: 61915.2 Da    PI: 10.1189
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0023s0210.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.22.4e-14308367152
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.....kr...krfslgkfgtaeeAakaaiaarkk 52 
                          s++kGV++++++++W+A+++dps +      kr   ++f+lg ++t+ eAa+a+++a+  
  Vocar.0023s0210.1.p 308 SQFKGVSRHRNTNKWEAHLWDPSVRRvgfrgKRawgRQFYLGAYDTEVEAAQAYDRAAIV 367
                          789******************999444565544678**********99*********975 PP
2AP229.12.5e-09413461152
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkk 52 
                          s+y+GV++++ +  W+A+I   +   g + +++lg f  +e Aa a++ a+++
  Vocar.0023s0210.1.p 413 SQYRGVTRHRASDLWEARIGNmF---G-KNYVYLGLFNLEEAAAMAYDFAALY 461
                          78****************99988...3.59*********77777777766655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.24E-15308378No hitNo description
SuperFamilySSF541713.47E-14308380IPR016177DNA-binding domain
PROSITE profilePS5103217.635309378IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-14309379IPR001471AP2/ERF domain
PfamPF008472.4E-9309369IPR001471AP2/ERF domain
SMARTSM003801.0E-20309384IPR001471AP2/ERF domain
PfamPF008472.0E-6413463IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-13413472IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.0E-13414472IPR001471AP2/ERF domain
SMARTSM003802.4E-15414478IPR001471AP2/ERF domain
PROSITE profilePS5103214.513414472IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000723Biological Processtelomere maintenance
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0010073Biological Processmeristem maintenance
GO:0010449Biological Processroot meristem growth
GO:0019827Biological Processstem cell population maintenance
GO:0040019Biological Processpositive regulation of embryonic development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MNEFAAAGAA GAAGAAGGIT AAGSCCQAAA EAGSLLDTVY GNAYGAPAAP PTSCGPLGPP  60
VAPPPHHRGT QHFQLFQQYQ QHYRRHEQQY RQYTAEPQPQ LQRRTDPRSG TVNGGVTEAG  120
RGVSGAPSFA DNLDHWDRGQ EGRGNVEAGN AVAGLATAAT ASGAAAFDSS LSHPPVPSQQ  180
HPQPQPQPLG STSSLEVAPG GPMQVGLPTA PTGGSPGIGL APNGEQLQAA LLKRLRKLSL  240
KRGIAGNKLI QRVISGKAPR ARSDVRGTLR IRTRSAAIDN PYSGAVNARV CKIIPSQLVR  300
RKRDSASSQF KGVSRHRNTN KWEAHLWDPS VRRVGFRGKR AWGRQFYLGA YDTEVEAAQA  360
YDRAAIVFWG VGAITNFPLE VYGEELESLL QLTKEDLMNS LRRRAYGFSR GESQYRGVTR  420
HRASDLWEAR IGNMFGKNYV YLGLFNLEEA AAMAYDFAAL YRDGPTALTN FHPEGYLHET  480
TGALLPFSWL PEVVKSGFAK WPKAVLSAAG DPRAAQPNNR NQRPAAATPV AGPATPSLGK  540
SSGPWCQRRP GGPTVEAAAA AAGGDLNTQR GSGENGPAAG TLEI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002957429.10.0pathogenesis-related genes transcriptional activator
TrEMBLD8UFM60.0D8UFM6_VOLCA; Pathogenesis-related genes transcriptional activator
STRINGXP_002957429.10.0(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP561657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.31e-43AP2 family protein