PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0026s0075.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family MYB_related
Protein Properties Length: 720aa    MW: 75379.2 Da    PI: 6.8154
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0026s0075.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.24.9e-1092133345
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                           W ++E+ ll++a+  +G g+W  +++++g g+ + qc+ +++
  Vocar.0026s0075.1.p  92 DWGADEEILLLEAIDIYGLGNWPGVSEHVG-GKNPAQCRQHYF 133
                          6*****************************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5013510.3742976IPR000433Zinc finger, ZZ-type
SMARTSM002912.7E-92974IPR000433Zinc finger, ZZ-type
SuperFamilySSF578505.18E-143396No hitNo description
CDDcd023351.53E-263381No hitNo description
PfamPF005692.3E-73372IPR000433Zinc finger, ZZ-type
PROSITE patternPS0135703562IPR000433Zinc finger, ZZ-type
SuperFamilySSF466896.88E-1285138IPR009057Homeodomain-like
PROSITE profilePS5129316.18888140IPR017884SANT domain
SMARTSM007175.3E-889138IPR001005SANT/Myb domain
PfamPF002494.5E-992133IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.3E-792132IPR009057Homeodomain-like
CDDcd001673.16E-993132No hitNo description
SuperFamilySSF466899.5E-20597683IPR009057Homeodomain-like
PROSITE profilePS509349.115598693IPR007526SWIRM domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009631Biological Processcold acclimation
GO:0009733Biological Processresponse to auxin
GO:0009735Biological Processresponse to cytokinin
GO:0042127Biological Processregulation of cell proliferation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 720 aa     Download sequence    Send to blast
MTLQESLGGR GKRRKLRDGV LNRTIQDARR ALYHCNYCQK DISHVPRIKC AECKDFDLCL  60
ECFSVGVEIK PHKNTHDYQV VENLSFPIYH PDWGADEEIL LLEAIDIYGL GNWPGVSEHV  120
GGKNPAQCRQ HYFAVYIDHD MMPLPRPTPE MAQVDISECI ARARQGYARS QFHGTIGDPQ  180
TRSEPPVAGG AGGSAAAAAA AATSPSLDGN LEDGERPADA ATPAAGGGLL DGTDPPAAAA  240
AAAGGHAAAG NKGMKRHRHE QLAAAAEGHG AEVHDGGAHA QTGGRSMHHE PGAAAAAVPN  300
TGGKGPRGGA GAGGGGGGGG GYDGGGGGAE PSSGHGKPSG SYDATGFHPK RMEFDPEYDN  360
DAECIVADME FSEYDNPADV QLKLQMLMLY NRRLDERERR RAFVLERSLL NTRAAQAVER  420
RRNTQERDLY ARMRVFARYQ SQSSHDELVE GLLLEARMRT RIAELREYRR NGIRTFVDAE  480
VYDTEKRRQK AAADAAVAAA NAVHGQPYSG PGRGAGKARA AAAAAAAAAA AAAAAAAGGG  540
MMQPGYGTPL GDDGLQLALA GTPTAGAGGG AVTSSSFEQA RPAASVPMGR GAGAALALWR  600
AKRGVPLDIT CMPGVELLGS RERELCAAQR LLPCHYLALK DMLLRDCEKN GAITKADART  660
FFRLDPARSV RIFELLVACG WIRGVGGSGK GGAAGGALRA ITAAGADTEG EEVDDRGDD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6cw2_C3e-31331485120Transcriptional adapter 2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002952656.11e-145hypothetical protein VOLCADRAFT_62830, partial
TrEMBLA0A150GCM70.0A0A150GCM7_GONPE; Transcriptional adapter
STRINGXP_002952656.11e-144(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP187466